Variant report
| Variant | rs7649622 |
|---|---|
| Chromosome Location | chr3:94583840-94583841 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11914374 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11919547 | 0.81[EUR][1000 genomes] |
| rs11925508 | 0.81[EUR][1000 genomes] |
| rs300077 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs66524820 | 1.00[EUR][1000 genomes] |
| rs6780760 | 0.83[EUR][1000 genomes] |
| rs73177754 | 0.98[EUR][1000 genomes] |
| rs73177760 | 0.98[EUR][1000 genomes] |
| rs73179414 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73179420 | 0.85[EUR][1000 genomes] |
| rs73179422 | 0.83[EUR][1000 genomes] |
| rs73179424 | 0.85[EUR][1000 genomes] |
| rs73179452 | 0.83[EUR][1000 genomes] |
| rs73179462 | 0.85[EUR][1000 genomes] |
| rs73179464 | 0.85[EUR][1000 genomes] |
| rs73179483 | 0.81[EUR][1000 genomes] |
| rs73179490 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs73847061 | 0.85[EUR][1000 genomes] |
| rs7635954 | 0.85[EUR][1000 genomes] |
| rs9872724 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460763 | chr3:94384332-94596072 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv590988 | chr3:94384332-94596072 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv877168 | chr3:94430430-94614333 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv460764 | chr3:94479849-94654181 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv590989 | chr3:94479849-94654181 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:94582800-94584000 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
