Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:94677747-94677909	H1-hESC	embryonic stem cell:	n/a	n/a
2	GATA3	chr3:94677742-94678462	MCF-7	breast:	n/a	n/a
3	TCF12	chr3:94677731-94678486	MCF-7	breast:	n/a	n/a
4	CEBPB	chr3:94677790-94678168	HepG2	liver:	n/a	chr3:94678081-94678092 chr3:94678080-94678093 chr3:94678080-94678091 chr3:94678080-94678093
5	CEBPB	chr3:94677749-94678401	MCF-7	breast:	n/a	chr3:94678081-94678092 chr3:94678080-94678093 chr3:94678080-94678091 chr3:94678080-94678093
6	CEBPB	chr3:94677717-94678167	IMR90	lung:	n/a	chr3:94678081-94678092 chr3:94678080-94678093 chr3:94678080-94678091 chr3:94678080-94678093

Variant related genes	Relation type
LINC00879	TF binding region

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11915767	0.88[EUR][1000 genomes]
rs11919547	0.96[EUR][1000 genomes]
rs11925508	0.96[EUR][1000 genomes]
rs1432470	0.90[EUR][1000 genomes]
rs1897462	0.90[EUR][1000 genomes]
rs28589479	0.86[EUR][1000 genomes]
rs300077	0.91[EUR][1000 genomes]
rs441713	0.86[EUR][1000 genomes]
rs61005216	0.88[EUR][1000 genomes]
rs61562444	0.88[EUR][1000 genomes]
rs6804802	0.98[EUR][1000 genomes]
rs73178274	0.94[EUR][1000 genomes]
rs73178277	0.94[EUR][1000 genomes]
rs73178279	0.94[EUR][1000 genomes]
rs73178292	0.88[EUR][1000 genomes]
rs73179414	0.83[EUR][1000 genomes]
rs73179420	0.91[EUR][1000 genomes]
rs73179422	0.89[EUR][1000 genomes]
rs73179424	0.91[EUR][1000 genomes]
rs73179452	0.93[EUR][1000 genomes]
rs73179462	0.91[EUR][1000 genomes]
rs73179464	0.91[EUR][1000 genomes]
rs73179469	0.92[EUR][1000 genomes]
rs73179470	0.92[EUR][1000 genomes]
rs73179478	0.98[EUR][1000 genomes]
rs73179483	0.96[EUR][1000 genomes]
rs73179490	0.96[EUR][1000 genomes]
rs73179499	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73180219	0.88[EUR][1000 genomes]
rs73181203	0.90[EUR][1000 genomes]
rs73181208	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73181209	0.94[EUR][1000 genomes]
rs73182103	0.96[EUR][1000 genomes]
rs73847061	0.91[EUR][1000 genomes]
rs7613024	0.86[EUR][1000 genomes]
rs7619245	0.82[EUR][1000 genomes]
rs7625489	0.94[EUR][1000 genomes]
rs7625700	0.88[EUR][1000 genomes]
rs7631481	0.86[EUR][1000 genomes]
rs7635954	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877169	chr3:94675697-94840854	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: