Variant report

Variant	rs1432470
Chromosome Location	chr3:94681865-94681866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NSUN3-1	chr3:94681774-94681940	ENSG00000239589
2	lnc-NSUN3-1	chr3:94681776-94681940	NONHSAT090739
3	lnc-NSUN3-1	chr3:94681743-94681940	NR_015400

Extended variants
information (count: 61 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11915767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11919062	1.00[ASN][1000 genomes]
rs11919547	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11925508	0.94[EUR][1000 genomes]
rs11927923	1.00[ASN][1000 genomes]
rs1432467	1.00[ASN][1000 genomes]
rs16853213	1.00[ASN][1000 genomes]
rs1897462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2217599	1.00[ASN][1000 genomes]
rs28589479	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs300077	0.90[EUR][1000 genomes]
rs34490494	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs441713	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55873906	1.00[ASN][1000 genomes]
rs56976797	1.00[ASN][1000 genomes]
rs57467432	1.00[ASN][1000 genomes]
rs58255697	1.00[ASN][1000 genomes]
rs58384132	1.00[ASN][1000 genomes]
rs61005216	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61562444	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804802	0.92[EUR][1000 genomes]
rs73178274	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73178277	0.92[EUR][1000 genomes]
rs73178279	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73178292	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179414	0.82[EUR][1000 genomes]
rs73179420	0.90[EUR][1000 genomes]
rs73179422	0.88[EUR][1000 genomes]
rs73179424	0.90[EUR][1000 genomes]
rs73179452	0.88[EUR][1000 genomes]
rs73179462	0.90[EUR][1000 genomes]
rs73179464	0.90[EUR][1000 genomes]
rs73179469	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179470	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73179478	0.92[EUR][1000 genomes]
rs73179483	0.94[EUR][1000 genomes]
rs73179490	0.94[EUR][1000 genomes]
rs73179494	0.90[EUR][1000 genomes]
rs73179499	0.90[EUR][1000 genomes]
rs73180219	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181203	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73181208	0.88[EUR][1000 genomes]
rs73181209	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73182103	0.90[EUR][1000 genomes]
rs73847061	0.90[EUR][1000 genomes]
rs73847083	1.00[ASN][1000 genomes]
rs73847087	1.00[ASN][1000 genomes]
rs7613024	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625489	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7625700	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627497	1.00[ASN][1000 genomes]
rs7631481	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634570	1.00[ASN][1000 genomes]
rs7635954	0.90[EUR][1000 genomes]
rs7642941	1.00[ASN][1000 genomes]
rs7647775	1.00[ASN][1000 genomes]
rs9714169	1.00[ASN][1000 genomes]
rs9811186	1.00[ASN][1000 genomes]
rs9853438	1.00[ASN][1000 genomes]
rs9878881	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877169	chr3:94675697-94840854	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1432470	HIST1H2AC	trans	cerebellum	SCAN
rs1432470	NSUN3	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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