Variant report
| Variant | rs58384132 |
|---|---|
| Chromosome Location | chr3:94609580-94609581 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:94591956..94593970-chr3:94609551..94611709,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11919062 | 1.00[ASN][1000 genomes] |
| rs11927923 | 1.00[ASN][1000 genomes] |
| rs1432467 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1432470 | 1.00[ASN][1000 genomes] |
| rs16853213 | 1.00[ASN][1000 genomes] |
| rs1897462 | 1.00[ASN][1000 genomes] |
| rs2217599 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28589479 | 1.00[ASN][1000 genomes] |
| rs34490494 | 1.00[ASN][1000 genomes] |
| rs441713 | 1.00[ASN][1000 genomes] |
| rs55873906 | 1.00[ASN][1000 genomes] |
| rs56976797 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57467432 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58255697 | 1.00[ASN][1000 genomes] |
| rs61005216 | 1.00[ASN][1000 genomes] |
| rs61562444 | 1.00[ASN][1000 genomes] |
| rs73178292 | 1.00[ASN][1000 genomes] |
| rs73179469 | 1.00[ASN][1000 genomes] |
| rs73179470 | 1.00[ASN][1000 genomes] |
| rs73180219 | 1.00[ASN][1000 genomes] |
| rs73181203 | 1.00[ASN][1000 genomes] |
| rs73847083 | 1.00[ASN][1000 genomes] |
| rs73847087 | 1.00[ASN][1000 genomes] |
| rs7613024 | 1.00[ASN][1000 genomes] |
| rs7625700 | 1.00[ASN][1000 genomes] |
| rs7627497 | 1.00[ASN][1000 genomes] |
| rs7631481 | 1.00[ASN][1000 genomes] |
| rs7634570 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7642941 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7647775 | 1.00[ASN][1000 genomes] |
| rs9714169 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9811186 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9853438 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9878881 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877168 | chr3:94430430-94614333 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv460764 | chr3:94479849-94654181 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv590989 | chr3:94479849-94654181 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:94594200-94610000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr3:94606600-94611600 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
