Variant report

Variant	rs7642941
Chromosome Location	chr3:94548287-94548288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1432467	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432470	1.00[ASN][1000 genomes]
rs1897462	1.00[ASN][1000 genomes]
rs2217599	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589479	1.00[ASN][1000 genomes]
rs441713	1.00[ASN][1000 genomes]
rs55873906	1.00[ASN][1000 genomes]
rs56976797	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57467432	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58255697	1.00[ASN][1000 genomes]
rs58384132	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61005216	1.00[ASN][1000 genomes]
rs61562444	1.00[ASN][1000 genomes]
rs73178292	1.00[ASN][1000 genomes]
rs73179469	1.00[ASN][1000 genomes]
rs73179470	1.00[ASN][1000 genomes]
rs73180219	1.00[ASN][1000 genomes]
rs73181203	1.00[ASN][1000 genomes]
rs73847083	1.00[ASN][1000 genomes]
rs73847087	1.00[ASN][1000 genomes]
rs7613024	1.00[ASN][1000 genomes]
rs7625700	1.00[ASN][1000 genomes]
rs7627497	1.00[ASN][1000 genomes]
rs7631481	1.00[ASN][1000 genomes]
rs7634570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647775	1.00[ASN][1000 genomes]
rs9714169	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811186	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460763	chr3:94384332-94596072	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv590988	chr3:94384332-94596072	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv877167	chr3:94430430-94554720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv877168	chr3:94430430-94614333	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv460764	chr3:94479849-94654181	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv590989	chr3:94479849-94654181	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94548200-94549200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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