Variant report

Variant	rs997528
Chromosome Location	chr3:94654813-94654814
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:94654680-94654830	MCF-7	breast:	n/a	n/a
2	GATA3	chr3:94654596-94655577	MCF-7	breast:	n/a	n/a
3	EP300	chr3:94654780-94655402	MCF-7	breast:	n/a	chr3:94655228-94655241
4	GATA3	chr3:94654617-94655585	MCF-7	breast:	n/a	n/a
5	HDAC2	chr3:94654739-94655431	MCF-7	breast:	n/a	n/a
6	HDAC2	chr3:94654779-94655392	MCF-7	breast:	n/a	n/a
7	SIN3AK20	chr3:94654450-94655668	MCF-7	breast:	n/a	n/a
8	TEAD4	chr3:94654779-94655347	MCF-7	breast:	n/a	chr3:94655059-94655068
9	GATA3	chr3:94654704-94655211	T-47D	breast:	n/a	n/a
10	GATA3	chr3:94654592-94655454	MCF-7	breast:	n/a	n/a
11	NR2F2	chr3:94654655-94655611	MCF-7	breast:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DHFRL1-2	chr3:94654604-94654964	NONHSAT090733

Variant related genes	Relation type
LINC00879	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1017370	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10804440	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10804441	0.90[ASN][1000 genomes]
rs10933818	0.87[ASN][1000 genomes]
rs1120672	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1120673	0.89[ASN][1000 genomes]
rs11706789	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11710300	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11718955	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11719000	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11918258	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11919926	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1368193	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1432468	0.94[ASN][1000 genomes]
rs1432469	0.90[ASN][1000 genomes]
rs1432473	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1529652	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1529653	0.90[ASN][1000 genomes]
rs1529654	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1549860	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1835872	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1897461	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1991752	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1991753	0.96[ASN][1000 genomes]
rs2116610	0.93[ASN][1000 genomes]
rs2116611	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2370168	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28588046	0.93[ASN][1000 genomes]
rs300090	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs300301	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs300305	0.88[ASN][1000 genomes]
rs300306	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs380053	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4857128	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4857129	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs49698	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6437515	0.94[ASN][1000 genomes]
rs6807717	0.88[ASN][1000 genomes]
rs7622398	0.94[ASN][1000 genomes]
rs7625912	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7626615	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7626749	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7627012	0.93[ASN][1000 genomes]
rs9809325	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9822197	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9822600	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9857434	0.94[ASN][1000 genomes]
rs9861234	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9880324	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs991552	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94654400-94655400	Enhancers	Fetal Heart	heart
2	chr3:94654400-94655600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:94654600-94655600	Enhancers	Hela-S3	cervix
4	chr3:94654800-94655600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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