Variant report

Variant	rs1432472
Chromosome Location	chr3:94598021-94598022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10804441	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1120673	0.82[EUR][1000 genomes]
rs11718955	0.89[JPT][hapmap]
rs11719000	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs11919926	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs13082015	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1368194	0.95[ASN][1000 genomes]
rs1368195	0.93[ASN][1000 genomes]
rs1368196	0.93[ASN][1000 genomes]
rs1368197	0.87[ASN][1000 genomes]
rs1368198	0.87[ASN][1000 genomes]
rs1368199	0.87[ASN][1000 genomes]
rs1432468	0.96[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs1432469	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1529653	0.82[EUR][1000 genomes]
rs1991752	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs1991753	0.96[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs2053009	0.92[ASN][1000 genomes]
rs2116610	0.88[EUR][1000 genomes]
rs2116612	0.99[ASN][1000 genomes]
rs2163680	0.87[ASN][1000 genomes]
rs2163681	0.83[ASN][1000 genomes]
rs2163682	0.87[ASN][1000 genomes]
rs28588046	0.88[EUR][1000 genomes]
rs300066	0.95[ASN][1000 genomes]
rs300090	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs380053	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs4241479	0.87[ASN][1000 genomes]
rs4461422	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4462967	0.81[EUR][1000 genomes]
rs4493433	0.87[ASN][1000 genomes]
rs4583664	0.87[ASN][1000 genomes]
rs4593024	0.81[ASN][1000 genomes]
rs4857495	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6437515	0.96[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes]
rs6777772	0.89[ASN][1000 genomes]
rs6801609	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7427844	0.85[ASN][1000 genomes]
rs7622398	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7626749	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs7627012	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs7642399	0.87[ASN][1000 genomes]
rs7646332	0.85[ASN][1000 genomes]
rs7649609	0.88[ASN][1000 genomes]
rs7652148	0.87[ASN][1000 genomes]
rs7653317	0.85[ASN][1000 genomes]
rs7653599	0.84[ASN][1000 genomes]
rs9637418	0.85[ASN][1000 genomes]
rs9714169	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs9847887	0.87[ASN][1000 genomes]
rs9848372	0.86[ASN][1000 genomes]
rs9854077	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs9857434	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs9867704	0.86[ASN][1000 genomes]
rs9871980	0.87[ASN][1000 genomes]
rs9872890	0.87[ASN][1000 genomes]
rs9879048	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877168	chr3:94430430-94614333	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv460764	chr3:94479849-94654181	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv590989	chr3:94479849-94654181	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94594200-94610000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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