Variant report

Variant	rs728066
Chromosome Location	chr3:94754450-94754451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1017370	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10212430	0.87[EUR][1000 genomes]
rs1021932	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10804440	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10804441	0.86[ASN][1000 genomes]
rs1120672	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1120673	0.85[ASN][1000 genomes]
rs11706789	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11707669	0.87[EUR][1000 genomes]
rs11710300	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11718955	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11719000	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11720623	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11918258	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1368193	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1373105	0.94[AFR][1000 genomes]
rs1432468	0.81[ASN][1000 genomes]
rs1432469	0.86[ASN][1000 genomes]
rs1432473	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1529652	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1529653	0.86[ASN][1000 genomes]
rs1529654	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1549860	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1835872	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1897461	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1991752	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2116610	0.81[ASN][1000 genomes]
rs2116611	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28588046	0.81[ASN][1000 genomes]
rs300301	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs300305	0.86[ASN][1000 genomes]
rs300306	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4857128	0.82[EUR][1000 genomes]
rs4857129	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs49698	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60730080	0.89[AFR][1000 genomes]
rs6437515	0.81[ASN][1000 genomes]
rs6807717	0.86[ASN][1000 genomes]
rs7622398	0.81[ASN][1000 genomes]
rs7624843	0.87[EUR][1000 genomes]
rs7625912	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7626615	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7626749	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7627012	0.81[ASN][1000 genomes]
rs7627313	0.87[EUR][1000 genomes]
rs7631515	0.87[EUR][1000 genomes]
rs7634882	0.85[EUR][1000 genomes]
rs7635097	0.87[EUR][1000 genomes]
rs9809325	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9813195	0.87[EUR][1000 genomes]
rs9822197	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9822600	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9827377	0.87[EUR][1000 genomes]
rs9830733	0.87[EUR][1000 genomes]
rs9830753	0.87[EUR][1000 genomes]
rs9830901	0.87[EUR][1000 genomes]
rs9838383	0.85[EUR][1000 genomes]
rs9850418	0.88[EUR][1000 genomes]
rs9861234	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9861368	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9880324	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs991552	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877169	chr3:94675697-94840854	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94754200-94755600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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