Variant report

Variant	rs9868858
Chromosome Location	chr3:94850034-94850035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10511151	0.81[EUR][1000 genomes]
rs10933902	0.98[ASN][1000 genomes]
rs10933932	0.88[ASN][1000 genomes]
rs10933941	0.80[ASN][1000 genomes]
rs11708513	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11708877	0.98[ASN][1000 genomes]
rs11708909	0.88[EUR][1000 genomes]
rs11712473	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11712965	0.88[EUR][1000 genomes]
rs11713390	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11713740	1.00[ASN][1000 genomes]
rs11713846	0.88[EUR][1000 genomes]
rs11715007	0.85[EUR][1000 genomes]
rs11719105	0.98[ASN][1000 genomes]
rs11916841	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11918166	0.86[ASN][1000 genomes]
rs11923227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923257	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923675	0.83[EUR][1000 genomes]
rs11923716	0.88[ASN][1000 genomes]
rs11923738	0.84[EUR][1000 genomes]
rs11925057	0.83[EUR][1000 genomes]
rs12486859	0.81[EUR][1000 genomes]
rs12630013	0.80[ASN][1000 genomes]
rs12630818	0.98[ASN][1000 genomes]
rs12630859	0.80[ASN][1000 genomes]
rs12631889	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634496	1.00[ASN][1000 genomes]
rs12695188	0.81[EUR][1000 genomes]
rs13070939	0.81[EUR][1000 genomes]
rs13075156	0.82[AFR][1000 genomes]
rs1476323	0.80[ASN][1000 genomes]
rs1516601	0.81[EUR][1000 genomes]
rs17383687	0.80[ASN][1000 genomes]
rs17383861	0.80[ASN][1000 genomes]
rs17384064	0.80[ASN][1000 genomes]
rs17442941	0.80[ASN][1000 genomes]
rs17497733	0.98[ASN][1000 genomes]
rs1968016	0.80[ASN][1000 genomes]
rs2048861	0.80[ASN][1000 genomes]
rs2310403	0.88[ASN][1000 genomes]
rs2310406	0.86[ASN][1000 genomes]
rs3849443	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3905401	0.93[ASN][1000 genomes]
rs3907753	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3926894	0.80[ASN][1000 genomes]
rs4610223	0.88[ASN][1000 genomes]
rs4857019	0.84[EUR][1000 genomes]
rs4857020	0.82[EUR][1000 genomes]
rs4857157	0.80[ASN][1000 genomes]
rs4857159	0.80[ASN][1000 genomes]
rs56233996	0.80[ASN][1000 genomes]
rs57291530	0.80[ASN][1000 genomes]
rs58549043	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58743887	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58977036	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59007421	0.80[ASN][1000 genomes]
rs61446477	0.80[ASN][1000 genomes]
rs6774134	0.80[ASN][1000 genomes]
rs67828560	0.88[EUR][1000 genomes]
rs6790397	0.82[EUR][1000 genomes]
rs6803510	0.82[AFR][1000 genomes]
rs6806247	0.82[AFR][1000 genomes]
rs6806586	0.82[AFR][1000 genomes]
rs6810229	0.80[ASN][1000 genomes]
rs72615781	0.98[ASN][1000 genomes]
rs72615782	0.98[ASN][1000 genomes]
rs72615787	0.95[ASN][1000 genomes]
rs72615791	0.88[ASN][1000 genomes]
rs72618498	0.80[ASN][1000 genomes]
rs72618499	0.80[ASN][1000 genomes]
rs72618500	0.80[ASN][1000 genomes]
rs72620004	0.80[ASN][1000 genomes]
rs72620005	0.80[ASN][1000 genomes]
rs7619484	0.81[EUR][1000 genomes]
rs7620908	0.85[EUR][1000 genomes]
rs7620952	0.82[AFR][1000 genomes]
rs7621233	0.80[EUR][1000 genomes]
rs7628826	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7639829	0.80[ASN][1000 genomes]
rs7643795	0.86[EUR][1000 genomes]
rs9288845	0.88[EUR][1000 genomes]
rs9288846	0.88[EUR][1000 genomes]
rs9809394	0.81[EUR][1000 genomes]
rs9812403	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9815317	0.82[AFR][1000 genomes]
rs9820431	0.82[AFR][1000 genomes]
rs9825156	0.88[EUR][1000 genomes]
rs9832182	0.81[EUR][1000 genomes]
rs9842570	0.87[EUR][1000 genomes]
rs9845130	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9847352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9855703	0.87[EUR][1000 genomes]
rs9864255	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9878073	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012191	chr3:94769139-94854973	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv536652	chr3:94769139-94854973	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv877171	chr3:94797731-94909337	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv877172	chr3:94807394-94943493	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv877173	chr3:94813120-94904714	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv460765	chr3:94837728-94904714	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv590994	chr3:94837728-94904714	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
12	nsv590995	chr3:94841342-94918524	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94840200-94855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:94849600-94850600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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