Variant report

Variant	rs6806247
Chromosome Location	chr3:94865213-94865214
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10933903	0.88[EUR][1000 genomes]
rs11916841	0.89[AFR][1000 genomes]
rs11923227	0.82[AFR][1000 genomes]
rs11923257	0.81[AFR][1000 genomes]
rs12631889	0.82[AFR][1000 genomes]
rs13075156	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080340	1.00[ASN][1000 genomes]
rs2310773	0.83[EUR][1000 genomes]
rs3849443	0.88[AFR][1000 genomes]
rs3907753	0.92[AFR][1000 genomes]
rs3913801	1.00[ASN][1000 genomes]
rs4527378	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58743887	0.84[AFR][1000 genomes]
rs58977036	0.84[AFR][1000 genomes]
rs60250258	1.00[ASN][1000 genomes]
rs6784528	0.81[EUR][1000 genomes]
rs6803510	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620952	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9810121	0.88[EUR][1000 genomes]
rs9812753	0.88[EUR][1000 genomes]
rs9814285	0.96[ASN][1000 genomes]
rs9815317	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9820431	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832238	0.88[EUR][1000 genomes]
rs9847352	0.82[AFR][1000 genomes]
rs9848285	0.88[EUR][1000 genomes]
rs9868858	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877171	chr3:94797731-94909337	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv877172	chr3:94807394-94943493	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv877173	chr3:94813120-94904714	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv460765	chr3:94837728-94904714	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	nsv590994	chr3:94837728-94904714	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv590995	chr3:94841342-94918524	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv590996	chr3:94857157-94914290	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94864400-94865400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:94864600-94865400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:94865200-94870400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:94865200-94870400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:94865200-94870400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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