Variant report

Variant	rs9810121
Chromosome Location	chr3:94866440-94866441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10933903	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11708513	0.83[AFR][1000 genomes]
rs11708909	0.81[AFR][1000 genomes]
rs11712473	0.83[AFR][1000 genomes]
rs11712965	0.81[AFR][1000 genomes]
rs11713390	0.83[AFR][1000 genomes]
rs11715007	0.89[AFR][1000 genomes]
rs11923675	0.89[AFR][1000 genomes]
rs11923738	0.89[AFR][1000 genomes]
rs11925057	0.89[AFR][1000 genomes]
rs13075156	0.88[EUR][1000 genomes]
rs1607049	0.82[EUR][1000 genomes]
rs2310773	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4857019	0.85[AFR][1000 genomes]
rs4857020	0.84[AFR][1000 genomes]
rs4857022	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58549043	0.84[AFR][1000 genomes]
rs67828560	0.81[AFR][1000 genomes]
rs6784528	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6803510	0.88[EUR][1000 genomes]
rs6806247	0.88[EUR][1000 genomes]
rs6806586	0.88[EUR][1000 genomes]
rs71326858	0.82[EUR][1000 genomes]
rs7620908	0.81[AFR][1000 genomes]
rs7620952	0.88[EUR][1000 genomes]
rs7643795	0.81[AFR][1000 genomes]
rs9288845	0.81[AFR][1000 genomes]
rs9288846	0.81[AFR][1000 genomes]
rs9812753	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9814958	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9815317	0.88[EUR][1000 genomes]
rs9820431	0.88[EUR][1000 genomes]
rs9825156	0.81[AFR][1000 genomes]
rs9832238	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9845130	0.81[AFR][1000 genomes]
rs9848285	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9854044	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9854655	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9855703	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877171	chr3:94797731-94909337	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv877172	chr3:94807394-94943493	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv877173	chr3:94813120-94904714	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv460765	chr3:94837728-94904714	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	nsv590994	chr3:94837728-94904714	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv590995	chr3:94841342-94918524	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv590996	chr3:94857157-94914290	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
12	nsv518266	chr3:94865957-94868320	Weak transcription	n/a	n/a	inside rSNPs	n/a
13	nsv590997	chr3:94865957-94918524	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94865200-94870400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:94865200-94870400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:94865200-94870400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:94865400-94870400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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