Variant report

Variant	rs6704122
Chromosome Location	chr1:209333286-209333287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10157395	1.00[EUR][1000 genomes]
rs11119242	1.00[EUR][1000 genomes]
rs1174553	1.00[EUR][1000 genomes]
rs1174554	1.00[EUR][1000 genomes]
rs1174560	1.00[EUR][1000 genomes]
rs11799698	1.00[EUR][1000 genomes]
rs11799703	1.00[EUR][1000 genomes]
rs11806622	1.00[EUR][1000 genomes]
rs13376171	1.00[EUR][1000 genomes]
rs17014150	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2185095	1.00[EUR][1000 genomes]
rs4291499	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4433394	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4644496	1.00[EUR][1000 genomes]
rs6540501	1.00[EUR][1000 genomes]
rs6540502	1.00[EUR][1000 genomes]
rs6675735	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6695495	1.00[EUR][1000 genomes]
rs713260	1.00[EUR][1000 genomes]
rs7526402	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873137	chr1:209301571-209338673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv522816	chr1:209325038-209342622	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209328200-209334000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:209328400-209334000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:209329600-209335800	Weak transcription	HSMM	muscle
4	chr1:209331000-209334000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:209333000-209333400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:209333000-209333600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:209333200-209333400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:209333200-209333600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:209333200-209334200	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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