Variant report

Variant rs6540501
Chromosome Location chr1:209237062-209237063
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:14 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:209225600-209245600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:209229600-209237600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr1:209232600-209237800 Enhancers Colon Smooth Muscle Colon
4 chr1:209234400-209238200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:209235800-209237600 Enhancers Fetal Adrenal Gland Adrenal Gland
6 chr1:209236000-209237600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr1:209236000-209237600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr1:209236600-209239000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr1:209236600-209239000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr1:209236800-209237600 Enhancers Fetal Heart heart
11 chr1:209236800-209238800 Enhancers GM12878-XiMat blood
12 chr1:209237000-209237800 Enhancers Fetal Stomach stomach
13 chr1:209237000-209239000 Enhancers HUES6 Cell Line embryonic stem cell
14 chr1:209237000-209239000 Enhancers iPS-15b Cell Line embryonic stem cell

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