Variant report

Variant	rs1933596
Chromosome Location	chr1:209325566-209325567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1174553	1.00[AMR][1000 genomes]
rs1174554	1.00[AMR][1000 genomes]
rs1174555	1.00[AMR][1000 genomes]
rs1174563	1.00[AMR][1000 genomes]
rs11799698	1.00[AMR][1000 genomes]
rs11799703	1.00[AMR][1000 genomes]
rs1184990	1.00[AMR][1000 genomes]
rs1933622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2788166	1.00[AMR][1000 genomes]
rs2970564	1.00[AMR][1000 genomes]
rs2970569	1.00[AMR][1000 genomes]
rs6540501	1.00[AMR][1000 genomes]
rs6540502	1.00[AMR][1000 genomes]
rs6692108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6694740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7526402	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873137	chr1:209301571-209338673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv522816	chr1:209325038-209342622	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209317800-209328400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:209321200-209328200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:209325200-209328400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:209325400-209328200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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