Variant report

Variant	rs2970569
Chromosome Location	chr1:209284772-209284773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1174553	1.00[AMR][1000 genomes]
rs1174554	1.00[AMR][1000 genomes]
rs1174555	1.00[AMR][1000 genomes]
rs1174563	1.00[AMR][1000 genomes]
rs11799698	1.00[AMR][1000 genomes]
rs11799703	1.00[AMR][1000 genomes]
rs1184990	1.00[AMR][1000 genomes]
rs1933596	1.00[AMR][1000 genomes]
rs1933622	1.00[AMR][1000 genomes]
rs2788166	1.00[AMR][1000 genomes]
rs2970564	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6540501	1.00[AMR][1000 genomes]
rs6540502	1.00[AMR][1000 genomes]
rs6692108	1.00[AMR][1000 genomes]
rs6694740	1.00[AMR][1000 genomes]
rs7526402	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006716	chr1:209261652-209285782	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209279000-209284800	ZNF genes & repeats	GM12878-XiMat	blood
2	chr1:209281800-209286800	Weak transcription	Fetal Brain Female	brain
3	chr1:209283200-209287200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:209284000-209285200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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