Variant report

Variant	rs6704218
Chromosome Location	chr1:223869380-223869381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223865937..223868606-chr1:223868668..223870208,2	MCF-7	breast:
2	chr1:223857293..223858818-chr1:223866737..223869584,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10799490	0.92[EUR][1000 genomes]
rs1109221	0.88[EUR][1000 genomes]
rs1109222	0.83[ASN][1000 genomes]
rs12408619	0.83[ASN][1000 genomes]
rs12566877	0.83[ASN][1000 genomes]
rs1936526	0.92[EUR][1000 genomes]
rs2000319	0.88[EUR][1000 genomes]
rs4653518	0.86[ASN][1000 genomes]
rs4653523	0.81[ASN][1000 genomes]
rs4653859	0.86[ASN][1000 genomes]
rs4653868	0.83[ASN][1000 genomes]
rs4653870	0.83[ASN][1000 genomes]
rs6661481	0.84[ASN][1000 genomes]
rs6671050	0.83[ASN][1000 genomes]
rs6676027	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6676365	0.88[EUR][1000 genomes]
rs6677519	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6687391	0.88[ASN][1000 genomes]
rs6687688	0.88[ASN][1000 genomes]
rs6692983	0.88[EUR][1000 genomes]
rs6699830	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72629690	0.84[ASN][1000 genomes]
rs72629691	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832681	chr1:223698048-224002691	Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3361888	chr1:223725597-224114846	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1007380	chr1:223834380-224042190	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv535310	chr1:223834380-224042190	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv34082	chr1:223851018-224144509	Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223862400-223869800	Weak transcription	Pancreas	Pancrea

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