Variant report

Variant	rs6661481
Chromosome Location	chr1:223876369-223876370
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:223876324-223876832	K562	blood:	n/a	chr1:223876682-223876693 chr1:223876713-223876724

Variant related genes	Relation type
RNU6-1248P	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10495210	0.81[AMR][1000 genomes]
rs10495212	0.81[AMR][1000 genomes]
rs10799570	0.81[AMR][1000 genomes]
rs10915972	0.91[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap]
rs10916633	0.90[CEU][hapmap];0.91[CHB][hapmap]
rs1109222	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1125346	0.86[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes]
rs12408619	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12566877	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16842027	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs2186009	0.86[CEU][hapmap];0.91[CHB][hapmap];0.80[EUR][1000 genomes]
rs34089008	0.81[AMR][1000 genomes]
rs4653518	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4653520	0.84[EUR][1000 genomes]
rs4653523	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4653859	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4653863	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4653868	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4653870	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4653877	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57611697	0.80[EUR][1000 genomes]
rs60773808	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6662068	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs6671050	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6677146	0.90[CEU][hapmap];0.91[CHB][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6677519	0.81[ASN][1000 genomes]
rs6687391	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6687688	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6691383	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6691396	0.88[EUR][1000 genomes]
rs6693911	0.86[CEU][hapmap];0.91[CHB][hapmap]
rs6699830	0.81[CHB][hapmap]
rs6701150	0.90[CEU][hapmap];0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6704218	0.84[ASN][1000 genomes]
rs68072917	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72629690	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72629691	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7549550	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832681	chr1:223698048-224002691	Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3361888	chr1:223725597-224114846	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1007380	chr1:223834380-224042190	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv535310	chr1:223834380-224042190	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv34082	chr1:223851018-224144509	Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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