Variant report
Variant | rs7549550 |
---|---|
Chromosome Location | chr1:223866922-223866923 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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No data |
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rs_ID | r2[population] |
---|---|
rs10799490 | 0.85[ASN][1000 genomes] |
rs10915972 | 0.85[CEU][hapmap] |
rs10916078 | 0.89[CHB][hapmap] |
rs10916633 | 0.85[CEU][hapmap] |
rs1109221 | 0.85[CHB][hapmap] |
rs1109222 | 0.93[CEU][hapmap];0.89[EUR][1000 genomes] |
rs1125346 | 0.81[CEU][hapmap] |
rs11587370 | 0.80[ASN][1000 genomes] |
rs12408619 | 0.90[EUR][1000 genomes] |
rs12566877 | 0.95[CEU][hapmap];0.90[EUR][1000 genomes] |
rs1573242 | 0.94[CHB][hapmap];0.94[JPT][hapmap] |
rs16842027 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
rs1936526 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
rs2186009 | 0.81[CEU][hapmap] |
rs4653518 | 0.90[EUR][1000 genomes] |
rs4653520 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4653523 | 0.95[CEU][hapmap];0.89[EUR][1000 genomes] |
rs4653859 | 0.90[EUR][1000 genomes] |
rs4653863 | 0.90[EUR][1000 genomes] |
rs4653868 | 0.94[CEU][hapmap];0.90[EUR][1000 genomes] |
rs4653870 | 0.95[CEU][hapmap];0.90[EUR][1000 genomes] |
rs6661481 | 0.95[CEU][hapmap];0.88[EUR][1000 genomes] |
rs6662068 | 0.95[CEU][hapmap] |
rs6668514 | 0.84[CHB][hapmap] |
rs6671050 | 0.95[CEU][hapmap];0.90[EUR][1000 genomes] |
rs6677146 | 0.85[CEU][hapmap] |
rs6687391 | 0.94[CEU][hapmap];0.88[EUR][1000 genomes] |
rs6687688 | 0.95[CEU][hapmap];0.88[EUR][1000 genomes] |
rs6691383 | 0.90[EUR][1000 genomes] |
rs6691396 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6692983 | 0.84[CHB][hapmap] |
rs6693911 | 0.81[CEU][hapmap] |
rs6701150 | 0.85[CEU][hapmap] |
rs72629690 | 0.90[EUR][1000 genomes] |
rs72629691 | 0.90[EUR][1000 genomes] |
rs7525504 | 0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv832681 | chr1:223698048-224002691 | Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
2 | nsv873211 | chr1:223707647-223867631 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | esv3361888 | chr1:223725597-224114846 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
4 | nsv1007380 | chr1:223834380-224042190 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
5 | nsv535310 | chr1:223834380-224042190 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
6 | esv34082 | chr1:223851018-224144509 | Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:223862400-223869800 | Weak transcription | Pancreas | Pancrea |
2 | chr1:223866400-223867600 | Enhancers | K562 | blood |
3 | chr1:223866600-223867200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
4 | chr1:223866600-223868000 | Enhancers | Primary monocytes fromperipheralblood | blood |
5 | chr1:223866800-223867800 | Enhancers | Monocytes-CD14+_RO01746 | blood |