Variant report

Variant	rs67063139
Chromosome Location	chr6:88441637-88441638
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:88409839..88413222-chr6:88440086..88443714,6	MCF-7	breast:
2	chr6:88440377..88442198-chr6:88447901..88450009,2	K562	blood:
3	chr6:88439163..88441928-chr6:88508734..88511728,2	MCF-7	breast:
4	chr6:88436022..88438583-chr6:88439057..88441989,2	MCF-7	breast:
5	chr6:88406148..88413760-chr6:88438581..88445163,10	K562	blood:
6	chr6:88409618..88413865-chr6:88438643..88442026,5	K562	blood:
7	chr6:88410191..88413652-chr6:88440103..88444215,8	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ORC3-3	chr6:88438474-88441973	predAs_engstrom06_CN262270_1

No data

Variant related genes	Relation type
ENSG00000135334	Chromatin interaction

rs_ID	r²[population]
rs12202349	0.82[AFR][1000 genomes]
rs16879736	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59131518	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs66588280	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67575319	0.87[ASN][1000 genomes]
rs72906514	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7748286	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9450782	0.90[AMR][1000 genomes]

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88433800-88441800	Weak transcription	Brain Angular Gyrus	brain
2	chr6:88437400-88441800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:88438200-88444200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:88438600-88441800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:88438600-88442800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:88438600-88443400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:88439200-88442400	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr6:88439200-88442600	Enhancers	Fetal Thymus	thymus
9	chr6:88439400-88441800	Enhancers	Spleen	Spleen
10	chr6:88439600-88441800	Enhancers	Primary B cells from cord blood	blood
11	chr6:88439600-88442800	Enhancers	HepG2	liver
12	chr6:88439800-88441800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:88439800-88442400	Enhancers	Fetal Intestine Large	intestine
14	chr6:88440000-88442200	Enhancers	Esophagus	oesophagus
15	chr6:88440000-88442400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:88440000-88442400	Enhancers	Thymus	Thymus
17	chr6:88440200-88441800	Enhancers	Colonic Mucosa	Colon
18	chr6:88440200-88442200	Enhancers	Fetal Muscle Leg	muscle
19	chr6:88440200-88442200	Enhancers	Psoas Muscle	Psoas
20	chr6:88440200-88442200	Enhancers	Small Intestine	intestine
21	chr6:88440200-88442400	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:88440200-88442400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:88440200-88442400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:88440200-88442600	Enhancers	Primary hematopoietic stem cells	blood
25	chr6:88440200-88442600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:88440400-88441800	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr6:88440400-88442200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:88440400-88442600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr6:88440400-88442600	Enhancers	Placenta	Placenta
30	chr6:88440800-88441800	Weak transcription	Right Ventricle	heart
31	chr6:88440800-88442600	Enhancers	NHEK	skin
32	chr6:88441000-88442200	Enhancers	Primary T cells fromperipheralblood	blood
33	chr6:88441000-88442400	Enhancers	Duodenum Mucosa	Duodenum
34	chr6:88441200-88442200	Enhancers	Fetal Intestine Small	intestine
35	chr6:88441200-88442200	Enhancers	Pancreas	Pancrea
36	chr6:88441200-88442200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr6:88441200-88442400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:88441200-88442400	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr6:88441200-88442400	Enhancers	Liver	Liver
40	chr6:88441200-88442400	Enhancers	Dnd41	blood
41	chr6:88441200-88442400	Enhancers	HUVEC	blood vessel
42	chr6:88441200-88442400	Enhancers	Osteobl	bone
43	chr6:88441200-88442600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:88441400-88441800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:88441400-88441800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr6:88441400-88442000	Enhancers	Brain Hippocampus Middle	brain
47	chr6:88441400-88442000	Enhancers	Fetal Kidney	kidney
48	chr6:88441400-88442000	Enhancers	Fetal Stomach	stomach
49	chr6:88441400-88442000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr6:88441400-88442200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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