Variant report

Variant	rs12202349
Chromosome Location	chr6:88444225-88444226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:88443508..88446358-chr6:88449853..88452798,2	MCF-7	breast:
2	chr6:88409408..88412450-chr6:88442071..88445120,3	K562	blood:
3	chr6:88406148..88413760-chr6:88438581..88445163,10	K562	blood:

Variant related genes	Relation type
ENSG00000135334	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10944328	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12211280	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12333083	0.84[ASN][1000 genomes]
rs13200115	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28394465	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58362651	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62419489	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67063139	0.82[AFR][1000 genomes]
rs6907816	0.84[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88442200-88446800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:88442200-88446800	Weak transcription	Small Intestine	intestine
3	chr6:88442200-88447000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:88442400-88446400	Weak transcription	HSMM	muscle
5	chr6:88442400-88446400	Weak transcription	HSMMtube	muscle
6	chr6:88442400-88446400	Weak transcription	HUVEC	blood vessel
7	chr6:88442400-88446400	Weak transcription	K562	blood
8	chr6:88442400-88446400	Weak transcription	NH-A	brain
9	chr6:88442400-88446600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:88442400-88446600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:88442400-88446600	Weak transcription	Osteobl	bone
12	chr6:88442400-88446800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:88442400-88446800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:88442400-88446800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:88442400-88446800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr6:88442400-88446800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:88442400-88447400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:88442600-88446600	Weak transcription	NHEK	skin
19	chr6:88442600-88446800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:88442600-88447600	Weak transcription	HMEC	breast
21	chr6:88442600-88448000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:88442600-88451600	Weak transcription	Primary B cells from cord blood	blood
23	chr6:88443200-88444800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:88443200-88445000	Enhancers	HepG2	liver
25	chr6:88444000-88446600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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