Variant report

Variant	rs13200115
Chromosome Location	chr6:88451934-88451935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88443508..88446358-chr6:88449853..88452798,2	MCF-7	breast:
2	chr6:88410402..88412865-chr6:88448656..88452587,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ORC3-4	chr6:88451798-88452057	NONHSAT113917

Variant related genes	Relation type
ENSG00000135334	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10081086	0.81[ASN][1000 genomes]
rs10944328	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967562	0.81[ASN][1000 genomes]
rs12201350	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12202349	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12211280	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325077	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28394465	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58362651	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62419489	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6907816	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6916761	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6926956	0.81[ASN][1000 genomes]
rs6941229	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9294388	0.88[ASN][1000 genomes]
rs9294389	0.81[ASN][1000 genomes]
rs9351130	0.81[ASN][1000 genomes]
rs9444542	0.88[ASN][1000 genomes]
rs9450800	0.81[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88448200-88452000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr6:88448200-88455000	Weak transcription	HepG2	liver
3	chr6:88448400-88452000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:88451000-88452400	Enhancers	K562	blood
5	chr6:88451000-88453000	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:88451000-88453000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:88451000-88453400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:88451200-88452800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:88451400-88452600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr6:88451400-88453600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:88451600-88452200	Enhancers	Fetal Thymus	thymus
12	chr6:88451600-88452400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:88451600-88452600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:88451600-88452800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:88451600-88452800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:88451600-88452800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr6:88451600-88453200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:88451600-88453200	Enhancers	Primary B cells from cord blood	blood
19	chr6:88451600-88453400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:88451600-88453600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr6:88451600-88453800	Enhancers	GM12878-XiMat	blood
22	chr6:88451800-88452200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:88451800-88452200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr6:88451800-88452200	Enhancers	Thymus	Thymus
25	chr6:88451800-88452400	Enhancers	Dnd41	blood

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