Variant report

Variant	rs12201350
Chromosome Location	chr6:88480325-88480326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10081086	0.89[ASN][1000 genomes]
rs10944328	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11967562	0.90[ASN][1000 genomes]
rs12198248	0.83[ASN][1000 genomes]
rs12211280	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13200115	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28394465	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58362651	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62419489	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6907816	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6916761	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6926956	0.90[ASN][1000 genomes]
rs6941229	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9294389	0.89[ASN][1000 genomes]
rs9351130	0.90[ASN][1000 genomes]
rs9359755	0.88[ASN][1000 genomes]
rs9450800	0.89[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88457800-88482400	Weak transcription	Placenta	Placenta
2	chr6:88472800-88481600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:88476200-88481400	Weak transcription	HepG2	liver
4	chr6:88476200-88481600	Weak transcription	Fetal Lung	lung
5	chr6:88477600-88482200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:88479400-88480400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:88479800-88482600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:88480200-88481600	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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