Variant report

Variant	rs10944328
Chromosome Location	chr6:88452856-88452857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10081086	0.81[ASN][1000 genomes]
rs11967562	0.81[ASN][1000 genomes]
rs12201350	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12202349	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12211280	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200115	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325077	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28394465	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58362651	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62419489	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6907816	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6916761	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6926956	0.81[ASN][1000 genomes]
rs6941229	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9294388	0.88[ASN][1000 genomes]
rs9294389	0.81[ASN][1000 genomes]
rs9351130	0.81[ASN][1000 genomes]
rs9444542	0.88[ASN][1000 genomes]
rs9450800	0.81[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88448200-88455000	Weak transcription	HepG2	liver
2	chr6:88451000-88453000	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:88451000-88453000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:88451000-88453400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:88451400-88453600	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr6:88451600-88453200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:88451600-88453200	Enhancers	Primary B cells from cord blood	blood
8	chr6:88451600-88453400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:88451600-88453600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr6:88451600-88453800	Enhancers	GM12878-XiMat	blood
11	chr6:88452000-88453400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:88452600-88453000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:88452600-88453400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:88452800-88457000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr6:88452800-88457000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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