Variant report

Variant	rs2325077
Chromosome Location	chr6:88453491-88453492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10944328	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12198248	0.92[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12211280	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13200115	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13205684	0.80[ASN][1000 genomes]
rs2153020	0.95[CHD][hapmap];0.88[GIH][hapmap];0.87[JPT][hapmap];0.84[TSI][hapmap]
rs28394465	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4707403	0.82[CEU][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.87[JPT][hapmap];0.84[TSI][hapmap];0.81[ASN][1000 genomes]
rs58362651	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62419489	0.85[ASN][1000 genomes]
rs6907816	0.85[ASN][1000 genomes]
rs7754587	0.81[ASN][1000 genomes]
rs9294388	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9342120	0.81[CHB][hapmap]
rs9362439	0.85[ASN][1000 genomes]
rs9444542	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88448200-88455000	Weak transcription	HepG2	liver
2	chr6:88451400-88453600	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr6:88451600-88453600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr6:88451600-88453800	Enhancers	GM12878-XiMat	blood
5	chr6:88452800-88457000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:88452800-88457000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr6:88453200-88457200	Weak transcription	Primary B cells from cord blood	blood
8	chr6:88453400-88453600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:88453400-88453600	Enhancers	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links