Variant report

Variant	rs7754587
Chromosome Location	chr6:88465553-88465554
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88410332..88412198-chr6:88465041..88467384,2	K562	blood:
2	chr6:88292221..88295024-chr6:88463844..88466637,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKIRIN2-1	chr6:88464899-88465633	expReg_chr6_7053_-

Variant related genes	Relation type
ENSG00000135334	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10081086	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11967562	0.88[ASN][1000 genomes]
rs12198248	0.85[ASN][1000 genomes]
rs13205684	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2153019	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2153020	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2325077	0.81[ASN][1000 genomes]
rs4707394	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4707403	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926956	0.88[ASN][1000 genomes]
rs7738899	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9294388	0.82[ASN][1000 genomes]
rs9294389	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9342120	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9344715	0.83[AMR][1000 genomes]
rs9351130	0.88[ASN][1000 genomes]
rs9359755	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9362439	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9362441	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9444542	0.82[ASN][1000 genomes]
rs9444543	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9450795	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9450800	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88457800-88482400	Weak transcription	Placenta	Placenta
2	chr6:88458200-88465600	Weak transcription	HepG2	liver
3	chr6:88461800-88466000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:88462800-88466200	Weak transcription	Right Atrium	heart
5	chr6:88463200-88465600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:88463200-88465800	Weak transcription	NHLF	lung
7	chr6:88463400-88465600	Weak transcription	NHDF-Ad	bronchial
8	chr6:88464000-88469800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:88464400-88466400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr6:88464400-88467600	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:88464600-88466600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr6:88464600-88467600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:88464800-88465800	Enhancers	GM12878-XiMat	blood
14	chr6:88464800-88467600	Enhancers	Primary B cells from cord blood	blood
15	chr6:88464800-88467600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:88465000-88466000	Enhancers	Fetal Intestine Large	intestine
17	chr6:88465000-88466400	Enhancers	Liver	Liver
18	chr6:88465000-88466800	Enhancers	Spleen	Spleen
19	chr6:88465200-88467800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:88465200-88468000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:88465400-88465600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:88465400-88465800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:88465400-88467000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:88465400-88467600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:88465400-88467600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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