Variant report

Variant	rs2153020
Chromosome Location	chr6:88482765-88482766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:88410522..88413208-chr6:88481678..88483564,2	K562	blood:
2	chr6:88411504..88413150-chr6:88482563..88484296,2	MCF-7	breast:
3	chr6:88482172..88484014-chr6:88484213..88486157,2	K562	blood:

Variant related genes	Relation type
ENSG00000135334	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10081086	0.84[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs11967562	0.84[ASN][1000 genomes]
rs12198248	0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.87[JPT][hapmap];0.84[TSI][hapmap];0.90[ASN][1000 genomes]
rs13205684	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2153019	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707403	0.85[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6926956	0.84[ASN][1000 genomes]
rs7738899	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7754587	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9294389	0.83[ASN][1000 genomes]
rs9342120	0.81[CHB][hapmap];0.80[LWK][hapmap];0.85[MKK][hapmap]
rs9351130	0.84[ASN][1000 genomes]
rs9359755	0.82[ASN][1000 genomes]
rs9362439	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9362441	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9450795	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9450800	0.83[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88481600-88483000	Enhancers	Fetal Stomach	stomach
2	chr6:88481600-88483600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:88481600-88483600	Enhancers	Fetal Lung	lung
4	chr6:88482000-88483200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:88482000-88483600	Flanking Active TSS	HepG2	liver
6	chr6:88482200-88482800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:88482200-88482800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:88482200-88482800	Enhancers	K562	blood
9	chr6:88482200-88483400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:88482200-88483400	Enhancers	Fetal Intestine Large	intestine
11	chr6:88482200-88483600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:88482200-88483600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:88482200-88483600	Enhancers	Fetal Kidney	kidney
14	chr6:88482400-88482800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:88482400-88482800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:88482400-88482800	Flanking Active TSS	A549	lung
17	chr6:88482400-88483000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:88482400-88483200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:88482400-88483400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:88482400-88483600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:88482400-88483600	Enhancers	Fetal Intestine Small	intestine
22	chr6:88482400-88483600	Enhancers	Placenta	Placenta
23	chr6:88482600-88483200	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr6:88482600-88483200	Enhancers	Ovary	ovary
25	chr6:88482600-88483400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:88482600-88483600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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