Variant report

Variant	rs4707403
Chromosome Location	chr6:88466990-88466991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88410332..88412198-chr6:88465041..88467384,2	K562	blood:

Variant related genes	Relation type
ENSG00000135334	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10081086	0.90[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11967562	0.88[ASN][1000 genomes]
rs12198248	0.81[CEU][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs13205684	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2153019	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2153020	0.85[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.90[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2325077	0.81[ASN][1000 genomes]
rs4707394	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6926956	0.88[ASN][1000 genomes]
rs7738899	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7754587	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294388	0.82[ASN][1000 genomes]
rs9294389	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9342120	0.84[ASW][hapmap];0.82[CEU][hapmap];0.85[CHB][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9344715	0.83[AMR][1000 genomes]
rs9351130	0.88[ASN][1000 genomes]
rs9359755	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9362439	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9362441	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9444542	0.82[ASN][1000 genomes]
rs9444543	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9450795	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9450800	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88457800-88482400	Weak transcription	Placenta	Placenta
2	chr6:88464000-88469800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:88464400-88467600	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:88464600-88467600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:88464800-88467600	Enhancers	Primary B cells from cord blood	blood
6	chr6:88464800-88467600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:88465200-88467800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:88465200-88468000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:88465400-88467000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:88465400-88467600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:88465400-88467600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:88465600-88467000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr6:88465600-88467000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:88465600-88467000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:88465600-88467000	Enhancers	A549	lung
16	chr6:88465600-88467000	Enhancers	Hela-S3	cervix
17	chr6:88465600-88467200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:88465600-88467200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:88465600-88467200	Enhancers	K562	blood
20	chr6:88465600-88467400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:88465600-88467400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:88465600-88467400	Enhancers	HepG2	liver
23	chr6:88465600-88467400	Enhancers	NH-A	brain
24	chr6:88465600-88467600	Enhancers	Primary hematopoietic stem cells	blood
25	chr6:88465600-88467600	Enhancers	HMEC	breast
26	chr6:88465800-88467000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:88465800-88467000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr6:88465800-88467000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:88465800-88467000	Enhancers	Fetal Lung	lung
30	chr6:88465800-88467000	Flanking Active TSS	GM12878-XiMat	blood
31	chr6:88465800-88467600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:88466000-88467000	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr6:88466000-88467000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr6:88466000-88467000	Enhancers	NHEK	skin
35	chr6:88466000-88467200	Weak transcription	Fetal Intestine Large	intestine
36	chr6:88466200-88467000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:88466200-88467400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:88466200-88467400	Enhancers	Right Atrium	heart
39	chr6:88466400-88467200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:88466400-88467600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr6:88466600-88467000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:88466600-88467000	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr6:88466600-88467000	Flanking Active TSS	Osteobl	bone
44	chr6:88466600-88467200	Enhancers	Primary T cells fromperipheralblood	blood
45	chr6:88466800-88467000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:88466800-88472000	Weak transcription	Spleen	Spleen

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