Variant report

Variant	rs9294388
Chromosome Location	chr6:88452258-88452259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88443508..88446358-chr6:88449853..88452798,2	MCF-7	breast:
2	chr6:88410402..88412865-chr6:88448656..88452587,3	K562	blood:

Variant related genes	Relation type
ENSG00000135334	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10944328	0.88[ASN][1000 genomes]
rs12198248	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12211280	0.88[ASN][1000 genomes]
rs13200115	0.88[ASN][1000 genomes]
rs13205684	0.82[ASN][1000 genomes]
rs2325077	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28394465	0.88[ASN][1000 genomes]
rs4707403	0.82[ASN][1000 genomes]
rs58362651	0.86[ASN][1000 genomes]
rs62419489	0.86[ASN][1000 genomes]
rs6907816	0.86[ASN][1000 genomes]
rs7738899	0.81[ASN][1000 genomes]
rs7754587	0.82[ASN][1000 genomes]
rs9362439	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9362441	0.81[ASN][1000 genomes]
rs9444542	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88448200-88455000	Weak transcription	HepG2	liver
2	chr6:88451000-88452400	Enhancers	K562	blood
3	chr6:88451000-88453000	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:88451000-88453000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:88451000-88453400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:88451200-88452800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:88451400-88452600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr6:88451400-88453600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:88451600-88452400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:88451600-88452600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr6:88451600-88452800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:88451600-88452800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr6:88451600-88452800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr6:88451600-88453200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:88451600-88453200	Enhancers	Primary B cells from cord blood	blood
16	chr6:88451600-88453400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:88451600-88453600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:88451600-88453800	Enhancers	GM12878-XiMat	blood
19	chr6:88451800-88452400	Enhancers	Dnd41	blood
20	chr6:88452000-88452800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr6:88452000-88453400	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr6:88452200-88452600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links