Variant report

Variant	rs7738899
Chromosome Location	chr6:88481411-88481412
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10081086	0.87[ASN][1000 genomes]
rs11967562	0.88[ASN][1000 genomes]
rs12198248	0.87[ASN][1000 genomes]
rs13205684	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2153019	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2153020	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4707403	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6926956	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7754587	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9294388	0.81[ASN][1000 genomes]
rs9294389	0.87[ASN][1000 genomes]
rs9351130	0.88[ASN][1000 genomes]
rs9359755	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9362439	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9362441	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9444542	0.81[ASN][1000 genomes]
rs9450795	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9450800	0.87[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88457800-88482400	Weak transcription	Placenta	Placenta
2	chr6:88472800-88481600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:88476200-88481600	Weak transcription	Fetal Lung	lung
4	chr6:88477600-88482200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:88479800-88482600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:88480200-88481600	Weak transcription	Fetal Stomach	stomach
7	chr6:88480400-88482600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:88481400-88482000	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links