Variant report

Variant	rs58362651
Chromosome Location	chr6:88447179-88447180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88424923..88427514-chr6:88446888..88448552,2	K562	blood:
2	chr6:88442062..88443837-chr6:88446893..88449170,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10944328	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12201350	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12202349	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12211280	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13200115	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2325077	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28394465	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62419489	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6907816	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6916761	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6941229	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9294388	0.86[ASN][1000 genomes]
rs9444542	0.86[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88442400-88447400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:88442600-88447600	Weak transcription	HMEC	breast
3	chr6:88442600-88448000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:88442600-88451600	Weak transcription	Primary B cells from cord blood	blood
5	chr6:88446600-88447400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:88446600-88447600	Weak transcription	K562	blood
7	chr6:88446600-88448400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:88446600-88449000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:88446800-88447200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:88446800-88447200	Enhancers	Small Intestine	intestine
11	chr6:88446800-88447400	Flanking Active TSS	GM12878-XiMat	blood
12	chr6:88446800-88447800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:88446800-88448000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:88446800-88448000	Enhancers	NHEK	skin
15	chr6:88446800-88448200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr6:88446800-88448200	Enhancers	Fetal Intestine Small	intestine
17	chr6:88446800-88448200	Enhancers	HepG2	liver
18	chr6:88446800-88448400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:88446800-88449000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr6:88446800-88449000	Enhancers	Fetal Intestine Large	intestine
21	chr6:88447000-88449400	Enhancers	Primary T cells fromperipheralblood	blood

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