Variant report

Variant	rs6916761
Chromosome Location	chr6:88464976-88464977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10081086	0.90[ASN][1000 genomes]
rs10944328	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11967562	0.89[ASN][1000 genomes]
rs12198248	0.82[ASN][1000 genomes]
rs12201350	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12211280	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13200115	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28394465	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58362651	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62419489	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6907816	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6926956	0.89[ASN][1000 genomes]
rs6941229	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9294389	0.90[ASN][1000 genomes]
rs9351130	0.89[ASN][1000 genomes]
rs9359755	0.87[ASN][1000 genomes]
rs9450800	0.90[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88456400-88465400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:88457800-88482400	Weak transcription	Placenta	Placenta
3	chr6:88458200-88465600	Weak transcription	HepG2	liver
4	chr6:88461800-88466000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:88462800-88466200	Weak transcription	Right Atrium	heart
6	chr6:88463200-88465600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:88463200-88465800	Weak transcription	NHLF	lung
8	chr6:88463400-88465600	Weak transcription	NHDF-Ad	bronchial
9	chr6:88464000-88469800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:88464400-88465000	Weak transcription	Spleen	Spleen
11	chr6:88464400-88466400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:88464400-88467600	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:88464600-88466600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr6:88464600-88467600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:88464800-88465800	Enhancers	GM12878-XiMat	blood
16	chr6:88464800-88467600	Enhancers	Primary B cells from cord blood	blood
17	chr6:88464800-88467600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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