Variant report

Variant	rs6941229
Chromosome Location	chr6:88469012-88469013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10081086	0.90[ASN][1000 genomes]
rs10944328	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11967562	0.89[ASN][1000 genomes]
rs12198248	0.82[ASN][1000 genomes]
rs12201350	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12211280	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13200115	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28394465	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58362651	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62419489	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6907816	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6916761	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926956	0.89[ASN][1000 genomes]
rs9294389	0.90[ASN][1000 genomes]
rs9351130	0.89[ASN][1000 genomes]
rs9359755	0.87[ASN][1000 genomes]
rs9450800	0.90[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88457800-88482400	Weak transcription	Placenta	Placenta
2	chr6:88464000-88469800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:88466800-88472000	Weak transcription	Spleen	Spleen
4	chr6:88467000-88469200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:88467000-88470000	Enhancers	GM12878-XiMat	blood
6	chr6:88467000-88475800	Weak transcription	Fetal Lung	lung
7	chr6:88467400-88469800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:88467400-88470400	Weak transcription	HepG2	liver
9	chr6:88467600-88469200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:88467600-88469600	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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