Variant report

Variant	rs6706720
Chromosome Location	chr2:86180754-86180755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:86179766..86181607-chr2:86220908..86223298,2	K562	blood:
2	chr2:86160879..86165285-chr2:86176010..86181999,6	MCF-7	breast:
3	chr2:86178306..86181703-chr2:86184579..86188621,5	MCF-7	breast:
4	chr2:86112970..86117219-chr2:86178282..86182179,5	MCF-7	breast:
5	chr2:86088793..86090572-chr2:86178202..86180924,2	MCF-7	breast:
6	chr2:86112745..86122516-chr2:86175080..86185190,27	MCF-7	breast:
7	chr2:85820787..85822313-chr2:86179412..86182366,2	K562	blood:
8	chr2:86137885..86140851-chr2:86180033..86182072,2	MCF-7	breast:
9	chr2:86179973..86182095-chr2:86197318..86199407,2	MCF-7	breast:
10	chr2:86135754..86137623-chr2:86180466..86183254,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000115525	Chromatin interaction
ENSG00000232504	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10181916	0.93[ASN][1000 genomes]
rs10186005	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10189191	0.93[ASN][1000 genomes]
rs10198260	0.92[ASN][1000 genomes]
rs1020095	0.93[ASN][1000 genomes]
rs11890514	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891625	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12470643	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12472588	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12476390	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12714163	0.93[ASN][1000 genomes]
rs12714164	0.92[ASN][1000 genomes]
rs12714165	0.92[ASN][1000 genomes]
rs13000793	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1438153	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1438155	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561330	0.93[ASN][1000 genomes]
rs1866242	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866243	0.85[EUR][1000 genomes]
rs1866245	0.93[ASN][1000 genomes]
rs4346389	0.93[ASN][1000 genomes]
rs4480982	0.90[ASN][1000 genomes]
rs4514874	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4832018	0.92[ASN][1000 genomes]
rs4832020	0.92[ASN][1000 genomes]
rs6547651	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708525	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6737454	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7597264	0.87[ASN][1000 genomes]
rs934830	0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6706720	IMMT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86175000-86183600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:86177000-86180800	Weak transcription	Adipose Nuclei	Adipose
3	chr2:86178000-86181000	Enhancers	K562	blood
4	chr2:86178800-86181800	Enhancers	A549	lung
5	chr2:86178800-86188200	Enhancers	Fetal Muscle Leg	muscle
6	chr2:86179200-86180800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:86179200-86182200	Weak transcription	Esophagus	oesophagus
8	chr2:86179200-86183600	Enhancers	Pancreas	Pancrea
9	chr2:86179200-86183800	Enhancers	Stomach Mucosa	stomach
10	chr2:86179600-86180800	Enhancers	Fetal Thymus	thymus
11	chr2:86179600-86181000	Enhancers	Brain Cingulate Gyrus	brain
12	chr2:86179800-86180800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:86179800-86181600	Enhancers	Brain Angular Gyrus	brain
14	chr2:86179800-86181800	Enhancers	Brain Hippocampus Middle	brain
15	chr2:86179800-86182000	Enhancers	Brain Substantia Nigra	brain
16	chr2:86180000-86180800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:86180000-86180800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:86180000-86181000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:86180000-86181000	Enhancers	Gastric	stomach
20	chr2:86180000-86181800	Enhancers	Brain Anterior Caudate	brain
21	chr2:86180000-86181800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr2:86180000-86181800	Enhancers	Lung	lung
23	chr2:86180000-86182000	Enhancers	Fetal Lung	lung
24	chr2:86180000-86183400	Enhancers	Fetal Muscle Trunk	muscle
25	chr2:86180200-86180800	Active TSS	Rectal Smooth Muscle	rectum
26	chr2:86180200-86181000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr2:86180200-86181000	Enhancers	Placenta	Placenta
28	chr2:86180200-86181800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:86180200-86183000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr2:86180200-86187600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr2:86180400-86180800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr2:86180400-86180800	Bivalent Enhancer	HepG2	liver
33	chr2:86180400-86181000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr2:86180400-86181200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:86180400-86181400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr2:86180400-86181800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr2:86180600-86180800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr2:86180600-86180800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr2:86180600-86181000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr2:86180600-86181000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr2:86180600-86181000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:86180600-86181000	Bivalent Enhancer	NHDF-Ad	bronchial
43	chr2:86180600-86181600	Weak transcription	Liver	Liver
44	chr2:86180600-86181600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr2:86180600-86182000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr2:86180600-86184200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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