Variant report

Variant	rs6707232
Chromosome Location	chr2:21814082-21814083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12714110	1.00[ASN][1000 genomes]
rs17042603	0.97[ASN][1000 genomes]
rs2216879	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4665343	0.91[AMR][1000 genomes]
rs4665895	1.00[AMR][1000 genomes]
rs57105491	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6721611	1.00[AMR][1000 genomes]
rs73921237	0.83[AMR][1000 genomes]
rs73921253	0.97[ASN][1000 genomes]
rs73921254	0.97[ASN][1000 genomes]
rs7584279	1.00[AMR][1000 genomes]
rs7585644	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21812600-21815400	Enhancers	Fetal Lung	lung
2	chr2:21813000-21815400	Enhancers	Fetal Brain Female	brain
3	chr2:21813600-21814600	Weak transcription	Fetal Brain Male	brain
4	chr2:21813800-21815000	Weak transcription	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links