Variant report
Variant | rs7584279 |
---|---|
Chromosome Location | chr2:21852600-21852601 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:21850970..21852650-chr2:21854430..21855981,2 | MCF-7 | breast: |
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-APOB-5 | chr2:21852296-21852867 | NONHSAT069498 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11885530 | 0.95[ASN][1000 genomes] |
rs11890428 | 0.95[ASN][1000 genomes] |
rs11894171 | 0.81[ASN][1000 genomes] |
rs11901833 | 0.81[ASN][1000 genomes] |
rs11902625 | 0.95[ASN][1000 genomes] |
rs17042814 | 0.95[ASN][1000 genomes] |
rs17042818 | 0.95[ASN][1000 genomes] |
rs2006198 | 0.95[ASN][1000 genomes] |
rs2216879 | 1.00[AMR][1000 genomes] |
rs4355148 | 0.95[ASN][1000 genomes] |
rs4665343 | 0.91[AMR][1000 genomes] |
rs4665895 | 1.00[AMR][1000 genomes] |
rs57105491 | 1.00[AMR][1000 genomes] |
rs58410505 | 0.90[ASN][1000 genomes] |
rs60022239 | 1.00[ASN][1000 genomes] |
rs6547797 | 0.95[ASN][1000 genomes] |
rs6547798 | 0.95[ASN][1000 genomes] |
rs6547799 | 0.95[ASN][1000 genomes] |
rs6547800 | 0.95[ASN][1000 genomes] |
rs6547801 | 0.95[ASN][1000 genomes] |
rs6547804 | 0.95[ASN][1000 genomes] |
rs6707232 | 1.00[AMR][1000 genomes] |
rs6719475 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs6721611 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs6737021 | 0.95[ASN][1000 genomes] |
rs6737862 | 0.95[ASN][1000 genomes] |
rs6750094 | 0.95[ASN][1000 genomes] |
rs6759533 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs72898229 | 0.95[ASN][1000 genomes] |
rs72898238 | 0.95[ASN][1000 genomes] |
rs73921237 | 0.83[AMR][1000 genomes] |
rs7583511 | 0.95[ASN][1000 genomes] |
rs7585644 | 1.00[AMR][1000 genomes] |
rs7594195 | 0.95[ASN][1000 genomes] |
rs7595261 | 0.95[ASN][1000 genomes] |
rs7599075 | 0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1011486 | chr2:21475803-22364002 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
2 | nsv535602 | chr2:21475803-22364002 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
3 | esv3406784 | chr2:21805088-22160765 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | nsv1003122 | chr2:21822998-21852600 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
5 | nsv1011732 | chr2:21822998-21857207 | Weak transcription Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:21843800-21855400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr2:21846600-21871200 | Weak transcription | Aorta | Aorta |
3 | chr2:21851200-21855600 | Weak transcription | Fetal Brain Female | brain |
4 | chr2:21852600-21852800 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |