Variant report

Variant	rs7594195
Chromosome Location	chr2:21860395-21860396
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21860325..21862394-chr2:21875707..21878517,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-APOB-5	chr2:21859141-21861410	NONHSAT069498

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11885530	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11890428	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11893111	0.85[EUR][1000 genomes]
rs11893913	0.90[EUR][1000 genomes]
rs11894171	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11897479	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11901833	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11902625	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042814	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042818	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042879	0.90[EUR][1000 genomes]
rs17680118	0.84[EUR][1000 genomes]
rs2006198	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4355148	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56259583	0.90[EUR][1000 genomes]
rs57064261	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58295677	1.00[EUR][1000 genomes]
rs58410505	0.95[ASN][1000 genomes]
rs59660521	0.90[EUR][1000 genomes]
rs60022239	0.95[ASN][1000 genomes]
rs60029510	0.84[EUR][1000 genomes]
rs60061690	0.95[EUR][1000 genomes]
rs60451450	0.90[EUR][1000 genomes]
rs61350387	0.90[EUR][1000 genomes]
rs6547797	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547798	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547799	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547800	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6547801	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547804	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708716	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6714387	0.90[EUR][1000 genomes]
rs6719475	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721611	0.95[ASN][1000 genomes]
rs6722505	0.90[EUR][1000 genomes]
rs6731548	0.90[EUR][1000 genomes]
rs6737021	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6737862	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6750094	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751535	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6754905	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6758775	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6759533	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897836	0.90[EUR][1000 genomes]
rs72897840	0.90[EUR][1000 genomes]
rs72897842	0.90[EUR][1000 genomes]
rs72897845	0.85[EUR][1000 genomes]
rs72897846	0.85[EUR][1000 genomes]
rs72897849	0.85[EUR][1000 genomes]
rs72897850	0.85[EUR][1000 genomes]
rs72897853	0.90[EUR][1000 genomes]
rs72897876	0.84[EUR][1000 genomes]
rs72898229	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898237	0.95[EUR][1000 genomes]
rs72898238	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898259	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72898265	0.90[EUR][1000 genomes]
rs73919125	0.90[EUR][1000 genomes]
rs73919132	0.84[EUR][1000 genomes]
rs7583511	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584279	0.95[ASN][1000 genomes]
rs7595261	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7599075	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9679075	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21846600-21871200	Weak transcription	Aorta	Aorta
2	chr2:21856800-21862200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:21857200-21865600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:21859400-21866200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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