Variant report

Variant	rs72898237
Chromosome Location	chr2:21865571-21865572
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11885530	0.95[EUR][1000 genomes]
rs11890428	1.00[EUR][1000 genomes]
rs11893111	0.90[EUR][1000 genomes]
rs11893913	0.95[EUR][1000 genomes]
rs11894171	0.95[EUR][1000 genomes]
rs11897479	1.00[EUR][1000 genomes]
rs11901833	1.00[EUR][1000 genomes]
rs11902625	0.95[EUR][1000 genomes]
rs17042814	1.00[EUR][1000 genomes]
rs17042818	1.00[EUR][1000 genomes]
rs17042879	0.95[EUR][1000 genomes]
rs2006198	1.00[EUR][1000 genomes]
rs4355148	1.00[EUR][1000 genomes]
rs56259583	0.95[EUR][1000 genomes]
rs57064261	1.00[EUR][1000 genomes]
rs57119946	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57994839	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58295677	0.95[EUR][1000 genomes]
rs59464527	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59660521	0.95[EUR][1000 genomes]
rs60029510	0.89[EUR][1000 genomes]
rs60061690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60445840	0.83[AMR][1000 genomes]
rs60451450	0.95[EUR][1000 genomes]
rs61350387	0.95[EUR][1000 genomes]
rs6547797	0.95[EUR][1000 genomes]
rs6547798	0.95[EUR][1000 genomes]
rs6547799	0.95[EUR][1000 genomes]
rs6547801	0.95[EUR][1000 genomes]
rs6547804	1.00[EUR][1000 genomes]
rs6708716	1.00[EUR][1000 genomes]
rs6714387	0.95[EUR][1000 genomes]
rs6719475	1.00[EUR][1000 genomes]
rs6722505	0.95[EUR][1000 genomes]
rs6731548	0.95[EUR][1000 genomes]
rs6737021	1.00[EUR][1000 genomes]
rs6737862	1.00[EUR][1000 genomes]
rs6750094	1.00[EUR][1000 genomes]
rs6751535	0.95[EUR][1000 genomes]
rs6754905	1.00[EUR][1000 genomes]
rs6758775	1.00[EUR][1000 genomes]
rs6759533	1.00[EUR][1000 genomes]
rs72897836	0.95[EUR][1000 genomes]
rs72897840	0.95[EUR][1000 genomes]
rs72897842	0.95[EUR][1000 genomes]
rs72897845	0.90[EUR][1000 genomes]
rs72897846	0.90[EUR][1000 genomes]
rs72897849	0.90[EUR][1000 genomes]
rs72897850	0.90[EUR][1000 genomes]
rs72897853	0.95[EUR][1000 genomes]
rs72897876	0.89[EUR][1000 genomes]
rs72898229	1.00[EUR][1000 genomes]
rs72898238	1.00[EUR][1000 genomes]
rs72898259	0.95[EUR][1000 genomes]
rs72898265	0.95[EUR][1000 genomes]
rs72899885	0.83[AMR][1000 genomes]
rs72899889	0.83[AMR][1000 genomes]
rs72899891	0.83[AMR][1000 genomes]
rs72899896	0.83[AMR][1000 genomes]
rs72899898	0.83[AMR][1000 genomes]
rs72899901	0.83[AMR][1000 genomes]
rs72901713	0.83[AMR][1000 genomes]
rs72901720	0.83[AMR][1000 genomes]
rs72901721	0.83[AMR][1000 genomes]
rs72901727	0.83[AMR][1000 genomes]
rs72901729	0.83[AMR][1000 genomes]
rs72901731	0.83[AMR][1000 genomes]
rs72901736	0.83[AMR][1000 genomes]
rs72901741	0.83[AMR][1000 genomes]
rs72901767	0.83[AMR][1000 genomes]
rs72901774	0.83[AMR][1000 genomes]
rs72909015	0.83[AMR][1000 genomes]
rs73919125	0.95[EUR][1000 genomes]
rs73919132	0.89[EUR][1000 genomes]
rs7583511	0.95[EUR][1000 genomes]
rs7594195	0.95[EUR][1000 genomes]
rs7595261	0.85[EUR][1000 genomes]
rs7599075	0.95[EUR][1000 genomes]
rs9679075	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21846600-21871200	Weak transcription	Aorta	Aorta
2	chr2:21857200-21865600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:21859400-21866200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:21862600-21872800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:21863000-21876000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr2:21863200-21866800	Weak transcription	Fetal Lung	lung
7	chr2:21864200-21867000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr2:21864200-21867400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:21864400-21865600	Weak transcription	Gastric	stomach
10	chr2:21864400-21867400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:21864600-21866600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:21864600-21866800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr2:21864800-21865800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr2:21864800-21866000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:21864800-21866600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr2:21864800-21866600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr2:21865400-21865800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:21865400-21866400	Enhancers	Ovary	ovary
19	chr2:21865400-21866800	Enhancers	Fetal Heart	heart
20	chr2:21865400-21867000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr2:21865400-21867200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr2:21865400-21867200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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