Variant report

Variant	rs11901833
Chromosome Location	chr2:21881559-21881560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11885530	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11890428	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11893111	0.90[EUR][1000 genomes]
rs11893913	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11894171	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11897479	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11902625	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17042814	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17042818	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17042879	0.95[EUR][1000 genomes]
rs2006198	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4355148	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56259583	0.95[EUR][1000 genomes]
rs57064261	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57119946	0.85[EUR][1000 genomes]
rs57994839	0.85[EUR][1000 genomes]
rs58295677	0.95[EUR][1000 genomes]
rs58410505	0.81[ASN][1000 genomes]
rs59464527	0.85[EUR][1000 genomes]
rs59660521	0.95[EUR][1000 genomes]
rs60022239	0.81[ASN][1000 genomes]
rs60029510	0.89[EUR][1000 genomes]
rs60061690	1.00[EUR][1000 genomes]
rs60451450	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61350387	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6547797	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6547798	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6547799	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6547800	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6547801	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6547804	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6708716	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6714387	0.95[EUR][1000 genomes]
rs6719475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6721611	0.81[ASN][1000 genomes]
rs6722505	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6731548	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6737021	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6737862	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6750094	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6751535	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6754905	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6758775	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6759533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72897836	0.95[EUR][1000 genomes]
rs72897840	0.95[EUR][1000 genomes]
rs72897842	0.95[EUR][1000 genomes]
rs72897845	0.90[EUR][1000 genomes]
rs72897846	0.90[EUR][1000 genomes]
rs72897849	0.90[EUR][1000 genomes]
rs72897850	0.90[EUR][1000 genomes]
rs72897853	0.95[EUR][1000 genomes]
rs72897876	0.89[EUR][1000 genomes]
rs72898229	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72898237	1.00[EUR][1000 genomes]
rs72898238	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72898259	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72898265	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73919125	0.95[EUR][1000 genomes]
rs73919132	0.89[EUR][1000 genomes]
rs7583511	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7584279	0.81[ASN][1000 genomes]
rs7585006	0.81[AFR][1000 genomes]
rs7594195	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7595261	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7599075	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9679075	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1004702	chr2:21874266-21934331	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21878200-21882400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:21878800-21882200	Enhancers	Fetal Lung	lung
3	chr2:21879200-21882400	Enhancers	Fetal Stomach	stomach
4	chr2:21880000-21881600	Weak transcription	Brain Germinal Matrix	brain
5	chr2:21881000-21881600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:21881000-21882000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:21881000-21882200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:21881000-21882200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:21881200-21881600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:21881200-21881600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr2:21881200-21881600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:21881200-21881600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:21881200-21881600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:21881200-21881600	Weak transcription	Colon Smooth Muscle	Colon
15	chr2:21881200-21881800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr2:21881200-21882400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:21881200-21882400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr2:21881200-21882400	Enhancers	Ovary	ovary
19	chr2:21881200-21882400	Enhancers	Rectal Smooth Muscle	rectum

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