Variant report

Variant	rs58410505
Chromosome Location	chr2:21874525-21874526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11885530	0.95[ASN][1000 genomes]
rs11890428	0.95[ASN][1000 genomes]
rs11894171	0.81[ASN][1000 genomes]
rs11901833	0.81[ASN][1000 genomes]
rs11902625	0.95[ASN][1000 genomes]
rs17042814	0.95[ASN][1000 genomes]
rs17042818	0.95[ASN][1000 genomes]
rs2006198	0.95[ASN][1000 genomes]
rs4355148	0.95[ASN][1000 genomes]
rs60022239	0.90[ASN][1000 genomes]
rs6547797	0.95[ASN][1000 genomes]
rs6547798	0.95[ASN][1000 genomes]
rs6547799	0.95[ASN][1000 genomes]
rs6547800	0.95[ASN][1000 genomes]
rs6547801	0.95[ASN][1000 genomes]
rs6547804	0.95[ASN][1000 genomes]
rs6719475	0.95[ASN][1000 genomes]
rs6721611	0.90[ASN][1000 genomes]
rs6737021	0.95[ASN][1000 genomes]
rs6737862	0.95[ASN][1000 genomes]
rs6750094	0.95[ASN][1000 genomes]
rs6759533	0.95[ASN][1000 genomes]
rs72898229	0.95[ASN][1000 genomes]
rs72898238	0.95[ASN][1000 genomes]
rs7583511	0.95[ASN][1000 genomes]
rs7584279	0.90[ASN][1000 genomes]
rs7594195	0.95[ASN][1000 genomes]
rs7595261	0.95[ASN][1000 genomes]
rs7599075	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1004702	chr2:21874266-21934331	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21863000-21876000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:21865800-21875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:21867200-21875200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:21871000-21878800	Weak transcription	Fetal Lung	lung
5	chr2:21872600-21876400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:21873800-21875800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:21874000-21875600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:21874200-21881200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:21874400-21879800	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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