Variant report

Variant	rs72897836
Chromosome Location	chr2:21910395-21910396
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-APOB-6	chr2:21910306-21912196	XLOC_002015
2	lnc-APOB-6	chr2:21910306-21912196	NONHSAT069503

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11885530	1.00[EUR][1000 genomes]
rs11890428	0.95[EUR][1000 genomes]
rs11893111	0.95[EUR][1000 genomes]
rs11893913	1.00[EUR][1000 genomes]
rs11894171	1.00[EUR][1000 genomes]
rs11897479	0.95[EUR][1000 genomes]
rs11901833	0.95[EUR][1000 genomes]
rs11902625	0.90[EUR][1000 genomes]
rs17042814	0.95[EUR][1000 genomes]
rs17042818	0.95[EUR][1000 genomes]
rs17042879	1.00[EUR][1000 genomes]
rs2006198	0.95[EUR][1000 genomes]
rs4355148	0.95[EUR][1000 genomes]
rs56259583	1.00[EUR][1000 genomes]
rs57064261	0.95[EUR][1000 genomes]
rs57119946	0.81[EUR][1000 genomes]
rs57994839	0.81[EUR][1000 genomes]
rs58295677	0.90[EUR][1000 genomes]
rs59464527	0.81[EUR][1000 genomes]
rs59660521	1.00[EUR][1000 genomes]
rs60029510	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60061690	0.95[EUR][1000 genomes]
rs60451450	1.00[EUR][1000 genomes]
rs61350387	1.00[EUR][1000 genomes]
rs6547797	0.90[EUR][1000 genomes]
rs6547798	0.90[EUR][1000 genomes]
rs6547799	0.90[EUR][1000 genomes]
rs6547801	0.90[EUR][1000 genomes]
rs6547804	0.95[EUR][1000 genomes]
rs6708716	0.95[EUR][1000 genomes]
rs6714387	1.00[EUR][1000 genomes]
rs6719475	0.95[EUR][1000 genomes]
rs6722505	1.00[EUR][1000 genomes]
rs6731548	1.00[EUR][1000 genomes]
rs6737021	0.95[EUR][1000 genomes]
rs6737862	0.95[EUR][1000 genomes]
rs6750094	0.95[EUR][1000 genomes]
rs6751535	1.00[EUR][1000 genomes]
rs6754905	0.95[EUR][1000 genomes]
rs6758775	0.95[EUR][1000 genomes]
rs6759533	0.95[EUR][1000 genomes]
rs72897840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72897846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72897849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72897850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72897853	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897876	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72898229	0.95[EUR][1000 genomes]
rs72898237	0.95[EUR][1000 genomes]
rs72898238	0.95[EUR][1000 genomes]
rs72898259	0.90[EUR][1000 genomes]
rs72898265	1.00[EUR][1000 genomes]
rs73919125	1.00[EUR][1000 genomes]
rs73919132	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7583511	0.90[EUR][1000 genomes]
rs7594195	0.90[EUR][1000 genomes]
rs7595261	0.81[EUR][1000 genomes]
rs7599075	0.90[EUR][1000 genomes]
rs9679075	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1004702	chr2:21874266-21934331	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv581171	chr2:21897192-21952204	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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