Variant report

Variant	rs7585006
Chromosome Location	chr2:21880408-21880409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11890428	0.81[AFR][1000 genomes]
rs11901833	0.81[AFR][1000 genomes]
rs17042814	0.81[AFR][1000 genomes]
rs2006198	0.80[AFR][1000 genomes]
rs6719475	0.88[ASW][hapmap];0.83[LWK][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1004702	chr2:21874266-21934331	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21874200-21881200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:21875800-21881200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:21875800-21881200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:21876000-21881000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:21876200-21881000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:21876200-21881200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:21876400-21881000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:21878200-21882400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:21878800-21882200	Enhancers	Fetal Lung	lung
10	chr2:21879200-21882400	Enhancers	Fetal Stomach	stomach
11	chr2:21880000-21881600	Weak transcription	Brain Germinal Matrix	brain
12	chr2:21880200-21881200	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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