Variant report

Variant	rs6709408
Chromosome Location	chr2:10250597-10250598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10247414..10249031-chr2:10249155..10251894,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10172702	0.85[ASN][1000 genomes]
rs10179663	0.93[ASN][1000 genomes]
rs10192090	0.89[ASN][1000 genomes]
rs10197121	0.89[ASN][1000 genomes]
rs10202672	0.90[ASN][1000 genomes]
rs10209383	0.93[ASN][1000 genomes]
rs10754955	0.89[ASN][1000 genomes]
rs11896140	0.94[ASN][1000 genomes]
rs12692399	0.93[ASN][1000 genomes]
rs12987867	0.93[ASN][1000 genomes]
rs13009708	0.93[ASN][1000 genomes]
rs13010608	0.93[ASN][1000 genomes]
rs13028656	0.85[ASN][1000 genomes]
rs13398833	0.94[ASN][1000 genomes]
rs13420725	0.87[ASN][1000 genomes]
rs16855510	0.94[ASN][1000 genomes]
rs2110641	0.93[ASN][1000 genomes]
rs2110642	0.88[ASN][1000 genomes]
rs2160190	0.93[ASN][1000 genomes]
rs2241113	0.93[ASN][1000 genomes]
rs2357465	0.93[ASN][1000 genomes]
rs2357466	0.93[ASN][1000 genomes]
rs2357467	0.93[ASN][1000 genomes]
rs4669531	0.93[ASN][1000 genomes]
rs6432066	0.93[ASN][1000 genomes]
rs6432067	0.93[ASN][1000 genomes]
rs6432068	0.93[ASN][1000 genomes]
rs6432069	0.93[ASN][1000 genomes]
rs6432070	0.93[ASN][1000 genomes]
rs6706570	0.93[ASN][1000 genomes]
rs6707144	0.93[ASN][1000 genomes]
rs6707406	0.93[ASN][1000 genomes]
rs6715077	0.97[ASN][1000 genomes]
rs6749325	0.93[ASN][1000 genomes]
rs6758411	0.93[ASN][1000 genomes]
rs7420698	0.93[ASN][1000 genomes]
rs7566175	0.93[ASN][1000 genomes]
rs7605457	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011125	chr2:9996740-10293803	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv1011689	chr2:10023891-10293803	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv1007965	chr2:10154960-10276125	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1014790	chr2:10156968-10274855	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv999019	chr2:10157762-10273232	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv873633	chr2:10175442-10266563	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
7	nsv1010706	chr2:10189219-10266995	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10242200-10260200	Weak transcription	Right Atrium	heart
2	chr2:10249800-10250600	Enhancers	GM12878-XiMat	blood
3	chr2:10250000-10255400	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links