Variant report

Variant	rs6715077
Chromosome Location	chr2:10247421-10247422
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10242851..10244392-chr2:10246100..10248698,2	K562	blood:
2	chr2:10247414..10249031-chr2:10249155..10251894,2	K562	blood:
3	chr2:10237946..10239499-chr2:10246498..10249450,2	K562	blood:
4	chr2:10237356..10239446-chr2:10246498..10248202,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10172702	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10179663	0.95[ASN][1000 genomes]
rs10192090	0.91[ASN][1000 genomes]
rs10197121	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10202672	0.92[ASN][1000 genomes]
rs10209383	0.95[ASN][1000 genomes]
rs10754955	0.91[ASN][1000 genomes]
rs1130609	0.81[JPT][hapmap]
rs11896140	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12692399	0.95[ASN][1000 genomes]
rs12987867	0.95[ASN][1000 genomes]
rs13009708	0.95[ASN][1000 genomes]
rs13010608	0.95[ASN][1000 genomes]
rs13028656	0.82[ASN][1000 genomes]
rs13398833	0.96[ASN][1000 genomes]
rs13420725	0.89[ASN][1000 genomes]
rs16855510	0.96[ASN][1000 genomes]
rs2110641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2110642	0.91[ASN][1000 genomes]
rs2160190	0.95[ASN][1000 genomes]
rs2241113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2357465	0.95[ASN][1000 genomes]
rs2357466	0.95[ASN][1000 genomes]
rs2357467	0.95[ASN][1000 genomes]
rs4668664	0.81[JPT][hapmap]
rs4669531	0.95[ASN][1000 genomes]
rs6432064	0.81[JPT][hapmap];0.82[YRI][hapmap]
rs6432066	0.95[ASN][1000 genomes]
rs6432067	0.95[ASN][1000 genomes]
rs6432068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6432069	0.95[ASN][1000 genomes]
rs6432070	0.95[ASN][1000 genomes]
rs6706570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6707144	0.95[ASN][1000 genomes]
rs6707406	0.95[ASN][1000 genomes]
rs6709408	0.97[ASN][1000 genomes]
rs6749325	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6758411	0.95[ASN][1000 genomes]
rs6759180	0.81[JPT][hapmap]
rs717886	0.81[JPT][hapmap]
rs718215	0.81[JPT][hapmap]
rs729917	0.81[JPT][hapmap]
rs7420698	0.94[ASN][1000 genomes]
rs7566175	0.95[ASN][1000 genomes]
rs7605457	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011125	chr2:9996740-10293803	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv1011689	chr2:10023891-10293803	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv1007965	chr2:10154960-10276125	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1014790	chr2:10156968-10274855	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv999019	chr2:10157762-10273232	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv873633	chr2:10175442-10266563	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
7	nsv1010706	chr2:10189219-10266995	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10242200-10260200	Weak transcription	Right Atrium	heart
2	chr2:10243800-10249200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:10245000-10247600	Weak transcription	Stomach Mucosa	stomach
4	chr2:10245600-10248600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:10247400-10248200	Enhancers	HepG2	liver

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