Variant report
| Variant | rs6710324 |
|---|---|
| Chromosome Location | chr2:56548761-56548762 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10173561 | 0.84[EUR][1000 genomes] |
| rs10179998 | 0.87[EUR][1000 genomes] |
| rs10183017 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10198922 | 0.86[EUR][1000 genomes] |
| rs10200099 | 0.82[ASN][1000 genomes] |
| rs10206915 | 0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12469239 | 0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1978376 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1978377 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1990759 | 0.83[ASN][1000 genomes] |
| rs2058870 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2058871 | 0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2111472 | 0.85[ASN][1000 genomes] |
| rs2216329 | 0.83[ASN][1000 genomes] |
| rs3886957 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4141565 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4141566 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs57973944 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6721952 | 0.83[ASN][1000 genomes] |
| rs6722198 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6731831 | 0.83[ASN][1000 genomes] |
| rs6761258 | 0.84[EUR][1000 genomes] |
| rs7601878 | 0.83[ASN][1000 genomes] |
| rs9679639 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9808260 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530516 | chr2:56447922-56633505 | Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv874170 | chr2:56496589-56590865 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv834093 | chr2:56538097-56708677 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv1004449 | chr2:56538460-56715861 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv874171 | chr2:56545845-56727178 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:56527600-56561000 | Weak transcription | HSMM | muscle |
| 2 | chr2:56546200-56552800 | Weak transcription | Left Ventricle | heart |
