Variant report

Variant	rs10173561
Chromosome Location	chr2:56568078-56568079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10166638	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10178971	0.89[CHB][hapmap]
rs10179998	0.90[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.93[EUR][1000 genomes]
rs10183017	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs10198922	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10200099	0.87[ASN][1000 genomes]
rs10206915	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10460558	0.94[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12469239	0.91[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs1549030	0.85[CEU][hapmap]
rs1978376	0.86[CEU][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs1978377	0.91[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1990759	0.89[ASN][1000 genomes]
rs2058870	0.95[CEU][hapmap];0.80[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2058871	0.94[EUR][1000 genomes]
rs2111470	0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2111472	0.85[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2216329	0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2869809	0.89[CHB][hapmap]
rs3886957	0.86[CEU][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs4141565	0.90[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs4141566	0.95[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs57973944	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6545564	0.82[EUR][1000 genomes]
rs6706818	0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6710324	0.84[EUR][1000 genomes]
rs6714529	0.83[EUR][1000 genomes]
rs6721952	0.89[ASN][1000 genomes]
rs6722198	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6731831	0.85[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6736091	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6761258	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7355289	0.83[EUR][1000 genomes]
rs7601878	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9679639	0.87[EUR][1000 genomes]
rs9808260	0.88[EUR][1000 genomes]
rs9917186	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv582032	chr2:56551074-56599354	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56560600-56575400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:56562400-56577600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:56564800-56574200	Weak transcription	HSMM	muscle
4	chr2:56566400-56572800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:56566400-56575200	Weak transcription	Fetal Heart	heart
6	chr2:56567000-56575200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:56567200-56568600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:56567400-56573200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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