Variant report

Variant	rs1549030
Chromosome Location	chr2:56507552-56507553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10173561	0.85[CEU][hapmap]
rs10178971	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs10179998	0.85[CEU][hapmap]
rs10206915	0.81[CHB][hapmap]
rs10460558	0.82[CHB][hapmap]
rs12469239	0.95[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs13389344	0.83[ASW][hapmap];0.91[LWK][hapmap];0.80[MKK][hapmap];0.80[YRI][hapmap];0.85[AFR][1000 genomes]
rs1978377	0.83[CEU][hapmap]
rs2058870	0.83[CEU][hapmap]
rs2111470	0.82[CHB][hapmap]
rs2869809	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4141566	0.83[CEU][hapmap]
rs4287805	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs6545564	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6706818	0.82[CHB][hapmap]
rs6714529	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6722198	0.87[CEU][hapmap]
rs7355289	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs888281	1.00[CHB][hapmap];0.81[CHD][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56488000-56514000	Weak transcription	HSMM	muscle
2	chr2:56503200-56513400	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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