Variant report

Variant	rs7355289
Chromosome Location	chr2:56518667-56518668
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10173561	0.83[EUR][1000 genomes]
rs10178971	0.86[ASN][1000 genomes]
rs10179998	0.82[EUR][1000 genomes]
rs10198922	0.82[EUR][1000 genomes]
rs12469239	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1549030	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1978377	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2058870	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2058871	0.83[EUR][1000 genomes]
rs2869809	0.86[ASN][1000 genomes]
rs34092204	0.87[ASN][1000 genomes]
rs4141566	0.81[EUR][1000 genomes]
rs57973944	0.81[EUR][1000 genomes]
rs6545564	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6714529	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6722198	0.81[EUR][1000 genomes]
rs6761258	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56515600-56526600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:56516400-56523400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:56516400-56525800	Weak transcription	HSMM	muscle
4	chr2:56516800-56524800	Weak transcription	Psoas Muscle	Psoas
5	chr2:56517200-56524800	Weak transcription	Left Ventricle	heart
6	chr2:56517400-56520000	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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