Variant report

Variant	rs2869809
Chromosome Location	chr2:56558348-56558349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10166638	0.88[EUR][1000 genomes]
rs10173561	0.89[CHB][hapmap]
rs10178971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179998	0.86[CHB][hapmap]
rs10198922	0.81[ASN][1000 genomes]
rs10200099	0.87[EUR][1000 genomes]
rs10202401	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10206915	0.95[CHB][hapmap]
rs10460558	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[EUR][1000 genomes]
rs12469239	0.91[CHB][hapmap]
rs12616389	0.81[JPT][hapmap]
rs1549030	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1978376	0.83[CHB][hapmap]
rs1990759	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2111470	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[EUR][1000 genomes]
rs2111472	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2193481	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs2216329	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2216330	0.85[AFR][1000 genomes]
rs34092204	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3886957	0.83[CHB][hapmap]
rs56777938	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6545564	0.88[ASN][1000 genomes]
rs6545571	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs6706818	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[EUR][1000 genomes]
rs6714529	0.90[ASN][1000 genomes]
rs6721952	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6722198	0.80[CEU][hapmap]
rs6731831	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6736091	0.88[EUR][1000 genomes]
rs7355289	0.86[ASN][1000 genomes]
rs7601878	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs888281	0.87[CHB][hapmap]
rs9309275	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9917186	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv582032	chr2:56551074-56599354	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56527600-56561000	Weak transcription	HSMM	muscle
2	chr2:56553400-56560400	Weak transcription	Left Ventricle	heart
3	chr2:56555400-56560800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr2:56556000-56560200	Weak transcription	Adipose Nuclei	Adipose
5	chr2:56556400-56560400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:56557800-56560400	Weak transcription	Right Atrium	heart
7	chr2:56558200-56561200	Weak transcription	Fetal Heart	heart

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