Variant report

Variant	rs67143028
Chromosome Location	chr11:100645463-100645464
allele	-/A/AC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100644974..100648921-chr11:100650172..100653387,4	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10128687	0.81[ASN][1000 genomes]
rs10895011	0.81[ASN][1000 genomes]
rs11224417	0.80[ASN][1000 genomes]
rs12286062	0.81[ASN][1000 genomes]
rs12291493	0.81[ASN][1000 genomes]
rs12419937	0.83[ASN][1000 genomes]
rs3858410	0.85[ASN][1000 genomes]
rs4495864	0.85[ASN][1000 genomes]
rs4753984	0.81[ASN][1000 genomes]
rs4754697	0.81[ASN][1000 genomes]
rs4754698	0.87[ASN][1000 genomes]
rs486023	0.94[ASN][1000 genomes]
rs492237	0.92[ASN][1000 genomes]
rs604723	0.81[ASN][1000 genomes]
rs607562	0.85[ASN][1000 genomes]
rs633185	0.81[ASN][1000 genomes]
rs6590817	0.81[ASN][1000 genomes]
rs6590820	0.83[ASN][1000 genomes]
rs667575	0.92[ASN][1000 genomes]
rs7103397	0.81[ASN][1000 genomes]
rs7105451	0.81[ASN][1000 genomes]
rs7112041	0.81[ASN][1000 genomes]
rs7114867	0.81[ASN][1000 genomes]
rs7125452	0.87[ASN][1000 genomes]
rs7130275	0.81[ASN][1000 genomes]
rs7928576	0.81[ASN][1000 genomes]
rs7930157	0.81[ASN][1000 genomes]
rs7952055	0.81[ASN][1000 genomes]
rs9919648	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520995	chr11:100163957-100681211	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530643	chr11:100196082-100713156	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100624600-100655600	Weak transcription	Left Ventricle	heart
2	chr11:100624600-100655600	Weak transcription	Right Ventricle	heart
3	chr11:100632200-100647200	Weak transcription	HSMM	muscle
4	chr11:100633000-100647000	Weak transcription	NHLF	lung
5	chr11:100633200-100655600	Weak transcription	Psoas Muscle	Psoas
6	chr11:100633600-100647400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:100635200-100647400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:100635400-100649400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:100635800-100645600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:100639800-100645600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:100639800-100647400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:100640000-100648600	Weak transcription	Small Intestine	intestine
13	chr11:100640000-100649600	Weak transcription	Fetal Kidney	kidney
14	chr11:100640000-100655600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:100640200-100647000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:100640200-100647200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:100640200-100648600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr11:100640200-100651000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:100640400-100646600	Weak transcription	Dnd41	blood
20	chr11:100640400-100647000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:100640400-100648800	Weak transcription	Osteobl	bone
22	chr11:100640400-100651000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:100640800-100645800	Weak transcription	Ovary	ovary
24	chr11:100640800-100655200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:100640800-100655200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:100640800-100655600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:100640800-100655600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:100641000-100646800	Weak transcription	HMEC	breast
29	chr11:100641400-100646600	Strong transcription	Placenta	Placenta
30	chr11:100641400-100649600	Weak transcription	Primary B cells from cord blood	blood
31	chr11:100641600-100645800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:100641800-100645800	Strong transcription	Fetal Muscle Leg	muscle
33	chr11:100643200-100646000	Weak transcription	Aorta	Aorta
34	chr11:100643200-100658000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:100643200-100660000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:100643400-100645600	Weak transcription	Liver	Liver
37	chr11:100643400-100646200	Weak transcription	HSMMtube	muscle
38	chr11:100643400-100648600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:100643400-100648600	Weak transcription	Esophagus	oesophagus
40	chr11:100643400-100649200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:100643400-100655600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr11:100644000-100645800	Weak transcription	NH-A	brain
43	chr11:100644200-100649200	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr11:100644200-100650000	Enhancers	Stomach Mucosa	stomach
45	chr11:100644400-100646000	Strong transcription	Fetal Lung	lung
46	chr11:100644400-100646600	Enhancers	Duodenum Mucosa	Duodenum
47	chr11:100644400-100648200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr11:100644400-100649800	Enhancers	Fetal Intestine Small	intestine
49	chr11:100644600-100647000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:100644600-100648000	Weak transcription	Fetal Heart	heart

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