Variant report

Variant	rs6714486
Chromosome Location	chr2:234580305-234580306
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:234578802..234581575-chr2:234598668..234600515,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167165	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11568318	1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs1551286	0.80[EUR][1000 genomes]
rs17862835	0.80[EUR][1000 genomes]
rs17862844	0.80[EUR][1000 genomes]
rs17862846	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17862848	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17862851	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17862854	0.90[EUR][1000 genomes]
rs17862859	0.88[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs17863784	0.88[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs17863795	1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs17864666	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17864670	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs17864671	0.80[EUR][1000 genomes]
rs17864675	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs17864689	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs17864691	0.95[EUR][1000 genomes]
rs17864692	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs17868298	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17868299	0.80[EUR][1000 genomes]
rs17868301	0.80[EUR][1000 genomes]
rs17868318	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17868320	0.95[EUR][1000 genomes]
rs17868338	1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs17868341	1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs28898590	0.95[EUR][1000 genomes]
rs45507691	0.90[EUR][1000 genomes]
rs56125405	0.92[EUR][1000 genomes]
rs56143032	0.95[EUR][1000 genomes]
rs6755571	0.95[EUR][1000 genomes]
rs7563478	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7585521	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529419	chr2:234229606-234670426	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv428072	chr2:234393609-234624769	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1010936	chr2:234549011-234640221	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234554600-234587800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:234559800-234592800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:234579800-234580600	Flanking Active TSS	Liver	Liver
4	chr2:234579800-234580600	Enhancers	A549	lung

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